PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK36732.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 255aa    MW: 28491.4 Da    PI: 5.5553
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK36732.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-1974133155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr++  +g+WvAeIr+p++ +g     r kr +lg+fgta eAa a+++a+ +++g
  KFK36732.1  74 CKFRGVRQRV-WGKWVAEIREPVNrRGggnsSRgKRLWLGTFGTAVEAAVAYDRAATSMYG 133
                 79******99.**********9998556776336**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.55E-2774143No hitNo description
PfamPF008478.6E-1374133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-2775142IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-1975142IPR016177DNA-binding domain
SMARTSM003801.1E-3275147IPR001471AP2/ERF domain
PROSITE profilePS5103221.37775141IPR001471AP2/ERF domain
PRINTSPR003676.4E-97687IPR001471AP2/ERF domain
PRINTSPR003676.4E-9107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MMEKEENGSK QSSSVSVESS KRRKRSVEPV EATLSKWVKK EEEGEGLETV RRVQAKGSKK  60
GCMRGKGGPE NPVCKFRGVR QRVWGKWVAE IREPVNRRGG GNSSRGKRLW LGTFGTAVEA  120
AVAYDRAATS MYGRFARVNF PEDLGNMPGG EMKNEEMENS RSYVSDTGNG VSGGKDGEGY  180
LAYDAEDTEF GEHKNENLDH MTNNEIVDSL VYENQAVKSE EECSFDRIGS DNGLLYNESG  240
YHGVGFNPYL EYYRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1576141360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid-inducible transcription. Involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:21069430}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00298DAPTransfer from AT2G38340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK36732.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) treatment (PubMed:11798174). Induced by salt, heat and drought stresses. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143395.11e-100PREDICTED: dehydration-responsive element-binding protein 2E
RefseqXP_013634722.11e-100PREDICTED: dehydration-responsive element-binding protein 2E
RefseqXP_013704026.11e-100dehydration-responsive element-binding protein 2E-like
RefseqXP_013705373.11e-100dehydration-responsive element-binding protein 2E-like
SwissprotO809178e-86DRE2E_ARATH; Dehydration-responsive element-binding protein 2E
TrEMBLA0A087H3N00.0A0A087H3N0_ARAAL; Uncharacterized protein
STRINGA0A087H3N00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142491823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.14e-71ERF family protein
Publications ? help Back to Top
  1. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]