PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37011.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HSF
Protein Properties Length: 231aa    MW: 26926.9 Da    PI: 4.9897
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37011.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.45.4e-34371282102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y+++ed++++e+isw+ +g+ fvv+++ efa+++Lp+ Fkh nf+SFvRQLn+YgF+kv++ +         weF+++ F+kg+++l+++i+
    KFK37011.1  37 FLVKTYKVVEDPTTDEVISWNGDGTGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIR---------WEFSNDMFRKGQRQLMCNIR 124
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+ks
    KFK37011.1 125 RRKS 128
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.3E-5633126IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.21E-3333126IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.7E-3634126IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-3037126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-183760IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-187587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-1888100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEDASDDFRY NVNISDEEGT MMGRPTSTAE LQPPPPFLVK TYKVVEDPTT DEVISWNGDG  60
TGFVVWQPAE FARDLLPTLF KHCNFSSFVR QLNTYGFRKV TTIRWEFSND MFRKGQRQLM  120
CNIRRRKSWS HSHKSHQVVP TAPLRQENHH HEEQRSSSTS SSFVYSALLD ENKCLKNENE  180
FLSSELGKTK KKCKQLMELV ERYRGEDEEE EETDDDNEED DGIKLFGVKL E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-223512618120Heat shock factor protein 1
5hdg_A2e-22351268110Heat shock factor protein 1
5hdn_A2e-22351268110Heat shock factor protein 1
5hdn_B2e-22351268110Heat shock factor protein 1
5hdn_C2e-22351268110Heat shock factor protein 1
5hdn_D2e-22351268110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181700.11e-121heat shock transcription factor B3
SwissprotO222301e-122HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A087H4F91e-173A0A087H4F9_ARAAL; Uncharacterized protein
STRINGA0A087H4F91e-174(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-109heat shock transcription factor B3