PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37023.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 282aa    MW: 31482.7 Da    PI: 8.3343
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37023.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.9e-06254276223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +Cp+C++ F+++ +L++Hi + H
  KFK37023.1 254 VCPKCSRGFRDPVDLVNHIERdH 276
                 7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183104.97E-12457No hitNo description
PROSITE profilePS510397.8261056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.3E-101152IPR000058Zinc finger, AN1-type
PfamPF014282.4E-131349IPR000058Zinc finger, AN1-type
SMARTSM001543.2E-61352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.2E-1091145IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.03E-893142No hitNo description
PROSITE profilePS510398.10998151IPR000058Zinc finger, AN1-type
PfamPF014284.2E-8101140IPR000058Zinc finger, AN1-type
SMARTSM001540.0089101142IPR000058Zinc finger, AN1-type
SMARTSM003550.069216239IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93216244IPR007087Zinc finger, C2H2
PROSITE patternPS000280218239IPR007087Zinc finger, C2H2
PfamPF056052.8E-7218277IPR008598Drought induced 19 protein type, zinc-binding domain
PROSITE profilePS501578.954253281IPR007087Zinc finger, C2H2
SMARTSM003557.9253276IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280255276IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDICKQ IDFLPFTCDR CLQVFCLDHR SYMKHSCPKG DREDVTVVIC  60
PLCAKGVRLN PNEDPNITWE KHVNTDCDPS NYEKVTKKKK CPVPRCKEQL TFSNTIKCRD  120
CNIDHCLKHR FGPDHTCPGP RKLEVNFPFM GFLGSSSSRK EAKTKRPTKA PASTSSSSSS  180
RWSNLLSSAE AGISKLGHDI SQKLQFSSSN DDGTVEVCPQ CGAKFFSVAT LVEHVEKTHE  240
SNKKQNHGNV TVDVCPKCSR GFRDPVDLVN HIERDHRGTS KA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37023.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0652720.0AY065272.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds.
GenBankAY0966200.0AY096620.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505969.11e-180PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-178SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A087H4H10.0A0A087H4H1_ARAAL; Uncharacterized protein
STRINGA0A087H4H10.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-178C2H2 family protein