PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37114.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family G2-like
Protein Properties Length: 268aa    MW: 30397.2 Da    PI: 8.8058
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37114.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.32.3e-3051104255
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 prlrWt++LH +Fv+av++LGG+++AtPk +l++m++kgL +++vkSHLQ+YR+
  KFK37114.1  51 PRLRWTHDLHLSFVRAVQRLGGPDRATPKLVLQMMNLKGLNIANVKSHLQMYRS 104
                 8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.89347107IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-2847105IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-2151106IPR006447Myb domain, plants
SuperFamilySSF466891.45E-1351105IPR009057Homeodomain-like
PfamPF002492.0E-752103IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAGTSSSGKC STWLDLNREE KNNEEESSIE DEDQHGTSSN NVRQYVRSNM PRLRWTHDLH  60
LSFVRAVQRL GGPDRATPKL VLQMMNLKGL NIANVKSHLQ MYRSKKLEPS SRHDIGAMMS  120
GHSSYLLDMI RIPYGDLRHV YNSKTAPSRV LNQDAVFTNL GGNFLMQPTS WFSGLSGNEW  180
HNQDSEKSKT LPLLEIRKTK NEKRVREEEA REVSSFKRLK SISGDGNQLH EFGNCKQKPK  240
DEINTMLSLS LFSTTSGECH IASDIVET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-1452106458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-1452106458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-1452106357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1452106357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1452106357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1452106357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-1452106458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-1452106458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-1452106458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-1452106458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-1452106458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-1452106458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37114.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881865.11e-131two-component response regulator ORR24
TrEMBLA0A087H4R20.0A0A087H4R2_ARAAL; Myb family transcription factor
STRINGA0A087H4R20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42660.11e-114G2-like family protein