PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37334.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family LBD
Protein Properties Length: 213aa    MW: 23595.7 Da    PI: 6.295
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37334.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.41.2e-3817116199
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+k+Cv+apyf a+q + +fa+vhk+FGasn +k+l +lp ++r da+ +l yeA ar+rdPvyG+vg++++lq+q+++l+aela+++
  KFK37334.1  17 PCGACKFLRRKCVKGCVFAPYFDADQgTTRFAAVHKVFGASNASKMLLRLPLHKRLDAVVTLSYEALARVRDPVYGSVGHLFSLQHQVMNLQAELAHVQ 115
                 7*************************88********************************************************************998 PP

      DUF260  99 e 99 
                 +
  KFK37334.1 116 A 116
                 6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.99916118IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-3717115IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MMTENLNGGG RGGEEGPCGA CKFLRRKCVK GCVFAPYFDA DQGTTRFAAV HKVFGASNAS  60
KMLLRLPLHK RLDAVVTLSY EALARVRDPV YGSVGHLFSL QHQVMNLQAE LAHVQACLST  120
FQHFSLEPSQ QMHQPPFDMA HTNEFPMEPS NLDVVWEEEQ LPQVGAEDNG EFQELSMQFV  180
SRACSCPSSS FNVSSFFYRD VTTNASAAFR YGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-36131117104LOB family transfactor Ramosa2.1
5ly0_B4e-36131117104LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37334.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436454.12e-97PREDICTED: LOB domain-containing protein 19-like
RefseqXP_018436455.12e-97PREDICTED: LOB domain-containing protein 19-like
SwissprotO221328e-91LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A087H5D21e-158A0A087H5D2_ARAAL; Uncharacterized protein
STRINGA0A087H5D21e-159(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.12e-93LOB domain-containing protein 19