PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK37340.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

GRF

Protein Properties

Length: 443aa MW: 49953.2 Da PI: 8.6476

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK37340.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.1	1.8e-24	92	136	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 +aep rCrRtDGKkWRCs++vl+ +k+CErH+hrgr+rsrk +e+ KFK37340.1 92 EAEPTRCRRTDGKKWRCSNTVLPSEKYCERHMHRGRNRSRKLVES 136 58***************************************9986 PP
2	WRC	67	2.4e-21	319	358	2	41
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrk 41 +epgrCrRtDGKkWRCs+++l+++k+C++H+hrg+ +++k KFK37340.1 319 DEPGRCRRTDGKKWRCSKDALSDQKYCDKHMHRGSIKRNK 358 69********************************877665 PP
3	QLQ	31.2	7e-12	32	64	5	37
QLQ 5 aaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 aQl ++ +Q l+y+y+ a++ vP++L+++i++ KFK37340.1 32 SAQLLEFQMQTLVYRYIEAGLRVPHHLVVPIWN 64 69******************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51666	13.104	29	64	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.3E-6	32	63	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.289	92	136	IPR014977	WRC domain
Pfam	PF08879	1.3E-20	93	135	IPR014977	WRC domain
PROSITE profile	PS51667	21.673	318	364	IPR014977	WRC domain
Pfam	PF08879	1.1E-17	320	359	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MSALQTFVMK KPKMEEEEEE VMVRKKWPCM KSAQLLEFQM QTLVYRYIEA GLRVPHHLVV 60 PIWNSLVLST SNYHIQHNHH SSSSVMSGKV EEAEPTRCRR TDGKKWRCSN TVLPSEKYCE 120 RHMHRGRNRS RKLVESTYEV ASSSASSTKQ DNTYGLESNK ESESVLPGAM SVSSDNASQV 180 VTIASFPRAR VCETITRPSL VISESTNNSV SHRKRSGGIM NMSYDDFLKQ RDSSNCVQVV 240 PVQGDESLPS VQKFFPEVSD ISLEAAKVSS NRKNYIIASS REWKETNVNR GLFPSIHFSP 300 DTVLQDRGGF RIHRFETADE PGRCRRTDGK KWRCSKDALS DQKYCDKHMH RGSIKRNKMQ 360 PVDTNPHENA GFNPFIAKTA ARSVSCKDRD DTKLSVSVMG VPLSRVSDEK TTSSCSTDTT 420 ITDIALKGEE DNEEYLSLCS SGV

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MSALQTFVMK KPKMEEEEEE VMVRKKWPCM KSAQLLEFQM QTLVYRYIEA GLRVPHHLVV  60
PIWNSLVLST SNYHIQHNHH SSSSVMSGKV EEAEPTRCRR TDGKKWRCSN TVLPSEKYCE  120
RHMHRGRNRS RKLVESTYEV ASSSASSTKQ DNTYGLESNK ESESVLPGAM SVSSDNASQV  180
VTIASFPRAR VCETITRPSL VISESTNNSV SHRKRSGGIM NMSYDDFLKQ RDSSNCVQVV  240
PVQGDESLPS VQKFFPEVSD ISLEAAKVSS NRKNYIIASS REWKETNVNR GLFPSIHFSP  300
DTVLQDRGGF RIHRFETADE PGRCRRTDGK KWRCSKDALS DQKYCDKHMH RGSIKRNKMQ  360
PVDTNPHENA GFNPFIAKTA ARSVSCKDRD DTKLSVSVMG VPLSRVSDEK TTSSCSTDTT  420
ITDIALKGEE DNEEYLSLCS SGV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269\|PubMed:21036927}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK37340.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002880181.1	0.0	growth-regulating factor 9 isoform X1
Swissprot	Q8S9M3	1e-180	GRF9_ARATH; Growth-regulating factor 9
TrEMBL	A0A087H5D8	0.0	A0A087H5D8_ARAAL; Uncharacterized protein
STRING	A0A087H5D8	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13760	20	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45480.1	1e-176	growth-regulating factor 9

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]