PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37357.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family TCP
Protein Properties Length: 280aa    MW: 29765.8 Da    PI: 9.8434
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37357.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.15.5e-3732112274
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........e 74 
                 + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++         
  KFK37357.1  32 PLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsvngtlkiP 112
                 67999***********************************************************88888443222222211 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-3037115IPR005333Transcription factor, TCP
PROSITE profilePS5136927.3273892IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAEVSFEPKP EPSPEVPPEV SMSLAPPSTV PPLKRASTKD RHTKVEGRGR RIRMPATCAA  60
RIFQLTRELG HKSDGETIRW LLENAEPAII AATGTGTVPA IAMSVNGTLK IPTTSNVDSD  120
LGENQVKKRR KRPSNSEYID INDAVSVSSG LAPVTTTVAQ PQGMIPMWAI PSIPTVGAFF  180
LVPTVAGPSN QPQMLAFPAG VSPSSSSYVA AVQQASSMAR PPQHVITGSV PSVMAPSSSS  240
GGGSTTTTNM LRDFSLEIYE KQEFHQFMTG TATTRSSNHR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125132VKKRRKRP
2126130KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37357.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397747.11e-153transcription factor TCP9
SwissprotO646471e-127TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A087H5F50.0A0A087H5F5_ARAAL; Uncharacterized protein
STRINGA0A087H5F50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-118TCP family protein