PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37424.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 247aa    MW: 29125.2 Da    PI: 4.4935
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37424.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-183486456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 ++f++eq++ Le +Fe++  +  +++ +LA++lgL+ rqV +WFqN+Ra++k
  KFK37424.1 34 QRRFSEEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWK 86
                579*************************************************9 PP
2HD-ZIP_I/II1216e-3933124293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ++rr+s+eq+k+LE++Fe+e++Lep++Kv+lareLglqprqva+WFqn+RAR+k+kqlE++y+ L+++y++l+++ e+L+ke+ +L +el++
   KFK37424.1  33 NQRRFSEEQIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEYNILRQNYNNLASQFESLKKEKLALVSELQR 124
                  68*************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.35E-181090IPR009057Homeodomain-like
PROSITE profilePS5007117.2972888IPR001356Homeobox domain
SMARTSM003893.0E-153192IPR001356Homeobox domain
CDDcd000863.69E-143489No hitNo description
PfamPF000464.8E-163486IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-183495IPR009057Homeodomain-like
PRINTSPR000317.3E-65968IPR000047Helix-turn-helix motif
PROSITE patternPS0002706386IPR017970Homeobox, conserved site
PRINTSPR000317.3E-66884IPR000047Helix-turn-helix motif
PfamPF021837.9E-1488128IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MIEGGEYSQA MMSSSDPFMS MKKMKKNNHN NNNQRRFSEE QIKSLEMMFE SETRLEPRKK  60
VQLARELGLQ PRQVAIWFQN KRARWKSKQL ETEYNILRQN YNNLASQFES LKKEKLALVS  120
ELQRLNEDMK KSEEEEQREC CGDQAVVALS STDHESENEE NPRSEPEDIK PEIEMYEKDH  180
QGALCDENNI KREYFGGFEE EADQLMNIVE PADSCLTSSD DWRGFKSDTT NLLDQSSSNY  240
PWWDFWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37424.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_182191.11e-145homeobox 7
SwissprotP468971e-146ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A087H5M20.0A0A087H5M2_ARAAL; Uncharacterized protein
STRINGA0A087H5M20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-130homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]