PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37431.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Dof
Protein Properties Length: 1461aa    MW: 163757 Da    PI: 7.8762
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37431.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.13.9e-3811771238263
      zf-Dof    2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63  
                  ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+sss
  KFK37431.1 1177 PQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSS 1238
                  6899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF495038.14E-14775IPR008972Cupredoxin
Gene3DG3DSA:2.60.40.4201.3E-111694IPR008972Cupredoxin
PfamPF077322.3E-121769IPR011707Multicopper oxidase, type 3
SuperFamilySSF495031.92E-3291260IPR008972Cupredoxin
CDDcd138755.14E-7493240No hitNo description
PfamPF003945.3E-3793240IPR001117Multicopper oxidase, type 1
Gene3DG3DSA:2.60.40.4206.1E-4095272IPR008972Cupredoxin
Gene3DG3DSA:2.60.40.4203.4E-27277448IPR008972Cupredoxin
SuperFamilySSF495031.74E-26281448IPR008972Cupredoxin
PfamPF077311.2E-20349448IPR011706Multicopper oxidase, type 2
PfamPF037326.4E-11856946IPR005162Retrotransposon gag domain
ProDomPD0074786.0E-2611761228IPR003851Zinc finger, Dof-type
PfamPF027013.7E-3211791235IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.90111811235IPR003851Zinc finger, Dof-type
PROSITE patternPS01361011831219IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0005507Molecular Functioncopper ion binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1461 aa     Download sequence    Send to blast
MNIGEISAAT RFYQFKVQTM RLTRLCQTKE IVTINGKFPG PAITAQEDDR IVVKVINMTP  60
YNTTIHWATV YGPLIVYPKA SVPYPFKKPF YEHTVLLGEY WLKNVVELEQ HVLESGGPPP  120
PADAFTINGQ PGPNYICSSK DVYEIKIVPR KTYLLRLINA GINMESFFTI ANHRLTIVEV  180
DGEYTKPFTT ERVMLVPGQT MNVLVTADQA IGRYSIAMGP YESAKNVKFQ NTSAIANFLY  240
FGALPNSVTL PAKLPIFNDN IAVKTVMDGL RSLNAVDVPK DIDDRLFITI GINVNKCNSE  300
NPIDKCQGPR EGRLAASLNN ISFVEPKVSI LEAYYKQLEG YFTLDFPTTP EKTYDFVNGA  360
PNDIANDTQA ANGTRAIVFE YGSRIQIIFQ NTGTLTTENH PIHLHGHSFY VIGYGTGNYD  420
QRTAEFNLED PPYLNTIGVP VGGWAAIRSL VIALPFRYPS NMGNEHDVYS EEWQDGARES  480
TSSSCRSTKV LASLKSTHDS NNQPVNKVNH YNPQLTRYYV KDHGKTSKKP FLAQKASDSI  540
QQLDHSRALN KLLDLVSHCC KDYQETRKSP EYDGAIRRAS INTNRRLKKH TQTHHHQQMN  600
KHRSLCEEED TYELKLQHLA RQVGGCEYLL RKMESNRTEN EHGNPNAQAE IQEVTPRAAF  660
STQSPGQDPE SSSHILRQDQ ARAGQVEQTP VRINEGELNL TDVIGTILSH VHQQEESNRK  720
INERLDLLTS IYPSRLEHVG APRQRNASTI PSIFDRLGGA NTPPTPANPI AGSAEASHPV  780
RPSALSRLSG SREDQDDRND DIRDLREKLR TMKSQVHQAL ISAPELDRVI EDAQRTPFTE  840
RITSVPVRKD AANCQIFVEY LDGPALEWFS RLEPNSIDDF LQLSFAFVKH YSLYLHDTAS  900
DSDLYDLEPQ GSKETLRNYM DRFKAVLSKV SVSDSSAISA LKQGLWHESE FRRDLVQHKA  960
YRLDDVLHRA SGFIRVEEDR AMNSKRQSAL KPSTPKPKSA KERIEDDYQE PRQHYDQDYK  1020
AKLQVNQVGS SNQSSQSSQG QSNKWVRGQD SKEGQSYCTF HKKYGHATSV CPSLMNVLLG  1080
KYNKGEIRVE SPQTLAEKNE APRPELEQRP GFQEMMNVKP MEQMMIPNSN THQSNTSSNA  1140
RPNTMLTSNG VSGAGATVSG VSNNNNTAVV VERKARPQEK LNCPRCNSTN TKFCYYNNYS  1200
LTQPRYFCKG CRRYWTEGGS LRNVPVGGSS RKNKRSSSSS SPNILQTTQS SLGLNTTLPD  1260
LNPPILFSNQ INKPKGSSQD LNLLSFPVMQ DQHHQHQHHV HMSQFLQMPK MEGTGNNITS  1320
SYGSSSSPVS ALELLRTGVN VSSRSGINSF MSMDSSNNLL YTSSGFPTMV DYKPSNLSFS  1380
NDHQGLGNNN NNNNNRSQDD QGRVLFPFGD QMKELSSSIT QEVDHDDNQQ QQKSHGNNNN  1440
ASPNNGYWSG MFSTTGGGPS W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1aoz_A3e-30114484494ASCORBATE OXIDASE
1aoz_B3e-30114484494ASCORBATE OXIDASE
1aso_A3e-30114484494ASCORBATE OXIDASE
1aso_B3e-30114484494ASCORBATE OXIDASE
1asp_A3e-30114484494ASCORBATE OXIDASE
1asp_B3e-30114484494ASCORBATE OXIDASE
1asq_A3e-30114484494ASCORBATE OXIDASE
1asq_B3e-30114484494ASCORBATE OXIDASE
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37431.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064180.0AC006418.4 Arabidopsis thaliana chromosome 2 clone F13A10 map CIC06C03, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A087H5M90.0A0A087H5M9_ARAAL; Uncharacterized protein
STRINGA0A087H5M90.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46590.21e-136Dof family protein