PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37445.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 336aa    MW: 38961.2 Da    PI: 6.5254
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37445.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13173224155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N  ++ Lr+l+P++   + ++ + a+i+  A++++k+L+
  KFK37445.1 173 QRMTHIAVERNRRRQMNVHLNSLRSLIPPS---YIPRGDQASIVGGAIDFVKNLE 224
                 79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-12171228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.78E-10171228No hitNo description
SuperFamilySSF474596.54E-15172238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.881172223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10173224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-10178229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MERIQGQNKL CVNILDQKVN VKRSIQVQRS ILEEEEQFTT PSLEDTTIPF LQMLPQSEDQ  60
DPSSYSSFKD TNILALLSLQ TLEKPWELEV PEFYSHSPIH SETNHYYYQN PSLEGGLNEA  120
ISSQELPLNS IDNANTRRKR KNNNLATTSM ITKEKRKRRR TKQTKNIEEM ETQRMTHIAV  180
ERNRRRQMNV HLNSLRSLIP PSYIPRGDQA SIVGGAIDFV KNLEQHLQSL EAQKITKQSE  240
TDRDILRATE EEEVKIDATV IESHVNLKIQ CLRKQGQLLR TIILLEKLRF SVLHLNITSP  300
SNTLVSYSFN LKMEDDCVLE SADEIRTMVR QIFDEI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138159KRKNNNLATTSMITKEKRKRRR
2154159KRKRRR
3155159RKRRR
4155160RKRRRT
5155162RKRRRTKQ
6173184RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37445.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880266.11e-158transcription factor bHLH70
SwissprotO810371e-150BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A087H5P30.0A0A087H5P3_ARAAL; Uncharacterized protein
STRINGA0A087H5P30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-139bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]