PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37583.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 279aa    MW: 32441.8 Da    PI: 6.5069
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37583.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.91.5e-1776128456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 + +++ eq+++Le+ Fe  +++  e++ +LAk lg++ rq+ +WFqNrRa++k
  KFK37583.1  76 KKRLQIEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWK 128
                 4457889*********************************************9 PP
2HD-ZIP_I/II124.45.1e-4074165192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekk+rl+ eqvk+LE+sFe  +kLeperK +la++Lg+qprq+a+WFqnrRAR+kt+qlE+dy++Lk+++++lk++n++L +++++L +e++
   KFK37583.1  74 EKKKRLQIEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFESLKSDNDSLLAHNKKLLAEVM 165
                  69*************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.63E-1864132IPR009057Homeodomain-like
SMARTSM003893.8E-1673134IPR001356Homeobox domain
PROSITE profilePS5007116.01874130IPR001356Homeobox domain
CDDcd000865.15E-1575131No hitNo description
PfamPF000469.0E-1576128IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-1878138IPR009057Homeodomain-like
PRINTSPR000313.0E-5101110IPR000047Helix-turn-helix motif
PROSITE patternPS000270105128IPR017970Homeobox, conserved site
PRINTSPR000313.0E-5110126IPR000047Helix-turn-helix motif
PfamPF021831.3E-15131170IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAFPQHGFMF QQLHEDNTHD QLTSCPPHLF NGGGNYMMNR SMSLTNVQED HHHHHQNMDE  60
ENLSDDGSHV MLGEKKKRLQ IEQVKALEKS FELGNKLEPE RKIQLAKALG MQPRQIAIWF  120
QNRRARWKTR QLERDYDSLK KQFESLKSDN DSLLAHNKKL LAEVMALKNK DCNEANIIKR  180
EAEASWSNNG STDNSSEINL ELPRETTTTH VNTIKDLFPS SIRSSAHHHD HDDDDHHQNH  240
GMVQEESFCN MFNGIDETTS AGYWAWSDPN HNHHHHQFN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00322DAPTransfer from AT3G01220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37583.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288900.0AK228890.1 Arabidopsis thaliana mRNA for putative homeobox-leucine zipper protein, complete cds, clone: RAFL16-20-K05.
GenBankAY0876310.0AY087631.1 Arabidopsis thaliana clone 3722 mRNA, complete sequence.
GenBankBT0292210.0BT029221.1 Arabidopsis thaliana At3g01220 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485524.10.0PREDICTED: homeobox-leucine zipper protein ATHB-20-like
SwissprotQ8LAT01e-180ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A087H6310.0A0A087H631_ARAAL; Uncharacterized protein
STRINGA0A087H6310.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.11e-175homeobox protein 20