PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37587.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WRKY
Protein Properties Length: 240aa    MW: 26692.8 Da    PI: 8.6562
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37587.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.83e-304099159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+++v+r+ +d +++++tYeg+Hnh+
  KFK37587.1 40 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRRQVQRCVDDMSILITTYEGTHNHP 99
                58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-3125101IPR003657WRKY domain
SuperFamilySSF1182907.59E-2833101IPR003657WRKY domain
PROSITE profilePS5081128.75935101IPR003657WRKY domain
SMARTSM007742.5E-3640100IPR003657WRKY domain
PfamPF031064.1E-274199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MNKVTGKRSS PSGDADDIGQ QNNVKRARVC VRARCDTLTM NDGCQWRKYG QKIAKGNPCP  60
RAYYRCTVAP GCPVRRQVQR CVDDMSILIT TYEGTHNHPL PLSATAMAST TAAAASMLLS  120
GSSTSLQSNS TMAGLETEMI KNDMDYDECT RRNVEQDSLH KFSLSRIGFY QELTIGFYQE  180
LTSFCARGKT MYCVANLILI CWVTGSGYCM PLPIGHIIMT MVMMGINGKK IRYSEDQVMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-2327101174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37587.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437679.12e-75PREDICTED: probable WRKY transcription factor 72
TrEMBLA0A087H6350.0A0A087H635_ARAAL; Uncharacterized protein
STRINGA0A087H6350.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67362741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.14e-48WRKY DNA-binding protein 72