PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37691.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 389aa    MW: 43336.5 Da    PI: 7.8715
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37691.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.14.7e-114267227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                ++++C+++ rtG C++G++C+F+H++
  KFK37691.1 42 GEPNCSYYIRTGLCRFGSTCRFNHPR 67
                789*********************96 PP
2zf-CCCH37.63.6e-1288112327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C ++++tGtCk+G +CkF+H++
  KFK37691.1  88 QPECEYYLKTGTCKFGVTCKFHHPR 112
                 799********************96 PP
3zf-CCCH36.77.1e-12134158327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C +f+rtG+Ck+G++CkF+H++
  KFK37691.1 134 EVDCAYFLRTGHCKFGGTCKFNHPQ 158
                 689********************97 PP
4zf-CCCH37.15.1e-12273299127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C+f+++tG Ck+G  CkF+H++
  KFK37691.1 273 PGQPECQFYMKTGDCKFGTVCKFHHPR 299
                 5789*********************96 PP
5zf-CCCH35.41.8e-11319345127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++lC f+ r+G+Ck+G++CkF H++
  KFK37691.1 319 PGEPLCVFYTRYGICKFGPSCKFDHPM 345
                 589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.8E-44067IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9484068IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-74267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-64568IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-44667IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-585112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.10885113IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-988112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-689114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-491112IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5131158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906131159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6134160IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9134158IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5272299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22272300IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8274299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6276301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4278300IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7318345IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187318346IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8320345IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5321345IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4323343IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDFNSGVPMS SLSPLMNQDA MWQMNLSSDE TMETGSYPER QGEPNCSYYI RTGLCRFGST  60
CRFNHPRDRE LVIATARMRG EYPERIGQPE CEYYLKTGTC KFGVTCKFHH PRNKAGIAGR  120
VSLNMLGYPL RPNEVDCAYF LRTGHCKFGG TCKFNHPQPQ PTNMMVPTSA QQSYSWPRAS  180
FIASPRWQDP SSYASLIMPQ GVVPVQGWNP YSGQLGSVSP SGNDQNYRNL QQSETNEPGS  240
QSQGSYSGYN AGSSVPVGGF YALPRENVFP ERPGQPECQF YMKTGDCKFG TVCKFHHPRD  300
RQAPSPDCLL SSIGLPLRPG EPLCVFYTRY GICKFGPSCK FDHPMRVFAY DNTGSETDEV  360
VETSSVQPRR QAATTTSSGK DTTIDTTQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37691.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0259660.0BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296584.20.0zinc finger CCCH domain-containing protein 33
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A087H6D90.0A0A087H6D9_ARAAL; Uncharacterized protein
STRINGA0A087H6D90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]