PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK37902.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GeBP
Protein Properties Length: 446aa    MW: 48799.1 Da    PI: 4.5519
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK37902.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573120.39.7e-38129227298
      DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                 lfqrlw++eDei lL+G++d+ ++++g s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq++fe+s+kiW++
  KFK37902.1 129 LFQRLWTDEDEIELLRGFLDYmTTHRGNSSHPpDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQSTFEISRKIWNQ 227
                 79*******************888999999989****************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.7E-34130226IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MTSDHRDAVF SLESPDLEEG GVGDGGESDT DDDVVMPETN EAEAEEDDPD PDPDPDPEEE  60
DLNSPSMVST TTAIVSDTAM ISSTGTVTVA LPAGSAVPVS VIPVDSDPKW HRMTEIVHQR  120
PPIDDSRRLF QRLWTDEDEI ELLRGFLDYM TTHRGNSSHP PDTAPFYEQI KSKLQLDFNK  180
NQLVEKLRRL KKKYRNVMSK ISSGKEVFFK SPHDQSTFEI SRKIWNQTGK IIGFEDNSVM  240
DFEETNGNNS NTNGGGNYSS FNSPSSNHAI EMIDSENGVV EKKLTMSSSS ASRKRSRSRI  300
GKIEEDNKPV MAPSDVHIPN ANAASNVNLN ETASVGIGGN LGGLIEETVK NCVSPVIKEM  360
MNGTTSMMMA AMGGGGGGGH GLGLTSPVFT RPFSFGFGGE GNKAVADERW RKQQILELEV  420
YSRRLELVQE QIRATLHELK TTPSGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293298KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK37902.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297660.10.0probable transcription factor At3g04930
SwissprotQ9CAV70.0STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLA0A087H7000.0A0A087H700_ARAAL; Uncharacterized protein
STRINGA0A087H7000.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.11e-169DNA-binding storekeeper protein-related transcriptional regulator