PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK38099.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 456aa    MW: 48677.5 Da    PI: 8.1612
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK38099.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-125176227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                +++ C +++rtG C yG+rC+F+H++
  KFK38099.1 51 DEPDCIYYLRTGVCGYGSRCRFNHPR 76
                6899********************96 PP
2zf-CCCH37.25.1e-1298122327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C++f+rtGtCk+G++Ck++H++
  KFK38099.1  98 HPVCQHFMRTGTCKFGASCKYHHPR 122
                 789********************96 PP
3zf-CCCH39.49.9e-13143167226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++++C++++rtG+Ck+G +C+F+H+
  KFK38099.1 143 GEKECSYYMRTGQCKFGLTCRFNHP 167
                 7899********************9 PP
4zf-CCCH39.96.9e-13300324226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++++C++f+rtG Ck+G++C+++H+
  KFK38099.1 300 DQPECQYFMRTGDCKFGSSCRYHHP 324
                 689*********************9 PP
5zf-CCCH32.61.3e-10346371227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 + + C +fa+ G+Ck+G+ CkF H++
  KFK38099.1 346 GVAQCTHFAQHGICKFGPACKFDHSM 371
                 6788********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2394977IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-44976IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-105176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-65377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-55576IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-695122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61995123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-696123IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-997122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5100122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77141169IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-6141168IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-10143167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5143168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4147166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.155298326IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6298325IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-10300324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6301327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4304323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723344372IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4344371IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-8346370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-5347372IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-4350371IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MERYGRTGEE GSRSDPSSLE WTTGETGVEA SMWRLGLTGG GGGEVFPERP DEPDCIYYLR  60
TGVCGYGSRC RFNHPRDRGA VVGGVRGEAG ALPERMGHPV CQHFMRTGTC KFGASCKYHH  120
PRQGSGSVAP VSISYLGYPL RPGEKECSYY MRTGQCKFGL TCRFNHPVVQ GPPQQQQQQQ  180
PQPQPQLQTI YPTLQSQAVP SSQQYGLVLA RPSLLPGSYL QSHYGPQMVL PPGMVPYSGW  240
NPYQASISAM PSPGTQPSMG SSSVYGITPL SPSATAYTGT YQSGPSSNTP KEQSFPQRPD  300
QPECQYFMRT GDCKFGSSCR YHHPLDAVPP KTGIVLSSIG LPLRPGVAQC THFAQHGICK  360
FGPACKFDHS MSSSLSYSPS ASSLTDMPVA PYPIGSSSLS GALAPISSSN KPTTTEPAVT  420
ATVSSPMVSS LTRQEPAETS SDSASVSGSI EAKTSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK38099.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2304380.0AK230438.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-43-G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407949.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ9SQU40.0C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLA0A087H7J70.0A0A087H7J7_ARAAL; Uncharacterized protein
STRINGA0A087H7J70.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]