PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK38122.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

M-type_MADS

Protein Properties

Length: 177aa MW: 20138.8 Da PI: 7.1998

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK38122.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.6	1.8e-19	11	57	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++++ +qvtfskRr g++KKA+EL +LC+aev +++fs+ +k y + KFK38122.1 11 VQDTNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSF 57 6788899*********************************9998877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.866	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.22E-25	1	74	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.3E-31	1	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.7E-23	12	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MGRRKIKMEQ VQDTNTKQVT FSKRRLGLFK KASELATLCN AEVGIVVFSP GNKPYSFGKP 60 NFDLIAERFK NDSEEEEDSC ETSGNSRGNR ARQEKKICKR LNSIIEDAEE EKKRSEKLQN 120 LLESAGEERF NKPIEELTLE ELIEYEAKMV KMHGGIQGNI NQMQASSSLM ILSKSDN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-16	1	82	1	82	MEF2 CHIMERA
6byy_B	2e-16	1	82	1	82	MEF2 CHIMERA
6byy_C	2e-16	1	82	1	82	MEF2 CHIMERA
6byy_D	2e-16	1	82	1	82	MEF2 CHIMERA
6bz1_A	2e-16	1	82	1	82	MEF2 CHIMERA
6bz1_B	2e-16	1	82	1	82	MEF2 CHIMERA
6bz1_C	2e-16	1	82	1	82	MEF2 CHIMERA
6bz1_D	2e-16	1	82	1	82	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK38122.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006407920.1	1e-102	agamous-like MADS-box protein AGL29
Swissprot	O64703	2e-65	AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBL	A0A087H7M0	1e-125	A0A087H7M0_ARAAL; Uncharacterized protein
STRING	A0A087H7M0	1e-126	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G66656.1	3e-83	AGAMOUS-like 91

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]