PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK38179.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 432aa    MW: 47092.1 Da    PI: 5.1232
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK38179.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.2e-06360382426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 ++C++f  +  C++G++C+F H+
  KFK38179.1 360 KPCMYFNSSRGCRHGANCSFQHD 382
                 69********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.436356384IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5360383IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4360382IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-5361391IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MRKSKRVSWP PDFKLCQVRL FISEDSPSQV GSESQDHLQA KSSGASHPND GNLPPGFGGH  60
LSADGLQIKL SDIPVIKWKR SVRILLDEEW RVVAGEESEE VEAQNQRELR VLEAFYPGAS  120
SIPPNPSVLA DVENSQYDDQ QTTVIPILPV EDDDIVMDSA SDLPNQFGVE VGTEPSVTND  180
NMPTVATLPV GSEIMAALAA ISNSKEQGSS LIDQDLLIKI LSNPKLVENL VANRGATSVS  240
STASSLLPST YEANGVVTTT PASSNGQFYP QPTVTHIPPM VYPPPAPSDH PNYGAPPARD  300
PSYYKNLIQQ HGGERQETPP IQQHLGYHYN VQPGGGPNPE MVNSNNNNQR PRDSKPKIMK  360
PCMYFNSSRG CRHGANCSFQ HDASVYQPRN INNGNINTGN ISNGNISTGN INSGNINTYE  420
TQNAKRMRFE RD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK38179.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416457.10.0zinc finger CCCH domain-containing protein 6 isoform X2
SwissprotQ56XU40.0C3H6_ARATH; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A087H7S70.0A0A087H7S7_ARAAL; Uncharacterized protein
STRINGA0A087H7S60.0(Arabis alpina)
Publications ? help Back to Top
  1. Mastrangelo AM, et al.
    Low temperature promotes intron retention in two e-cor genes of durum wheat.
    Planta, 2005. 221(5): p. 705-15
    [PMID:15666155]