PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK38576.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 249aa    MW: 25982.1 Da    PI: 9.7016
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK38576.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.6e-073962225
                -S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                k ++C  f+ t  C++G++C+F H
  KFK38576.1 39 KSKPCTKFFSTSGCPFGENCHFLH 62
                7789******************** PP
2zf-CCCH345e-11215240127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +kt+ C +fa+ G C +GdrC+FaHg+
  KFK38576.1 215 FKTKMCERFAK-GSCTFGDRCHFAHGE 240
                 69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.843765IPR000571Zinc finger, CCCH-type
SMARTSM003560.213764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-63864IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-83962IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-53962IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.8E-15104184IPR004088K Homology domain, type 1
SMARTSM003229.1E-10113183IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.103.5E-16113182IPR004088K Homology domain, type 1
PROSITE profilePS5008414.487114178IPR004088K Homology domain, type 1
PfamPF000133.8E-11116180IPR004088K Homology domain, type 1
CDDcd001052.39E-12116182No hitNo description
Gene3DG3DSA:4.10.1000.105.0E-16209244IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-8214244IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6214240IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.568214241IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7215240IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDARKRGRPE AAGSFNSNGG GFKKSKQEME SYSTGLGSKS KPCTKFFSTS GCPFGENCHF  60
LHYVPGGYNA VAQLTNMGPP MPQVSRNMQG SGGGGRFSER GEPGHGHVSS FGASATAKIS  120
VDASLAGVII GKGGVSSKQI CRQTGAKLSI QDHENDPTLK YIELEGTFEQ INEANAMVKE  180
LIGRINSSAK RPPGGGGGGG GGMGSEGKPH PGSNFKTKMC ERFAKGSCTF GDRCHFAHGE  240
AELRRSGIA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK38576.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273730.0AK227373.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-04-J23.
GenBankAY0857460.0AY085746.1 Arabidopsis thaliana clone 17632 mRNA, complete sequence.
GenBankBT0250320.0BT025032.1 Arabidopsis thaliana At3g12130 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407365.11e-152zinc finger CCCH domain-containing protein 36
SwissprotQ9C7C31e-147C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A087H8X41e-180A0A087H8X4_ARAAL; Uncharacterized protein
STRINGA0A087H8X40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-132C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]