PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK38615.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 527aa    MW: 58298.4 Da    PI: 7.5373
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK38615.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.29.9e-12181204326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 ++ C ++++t tCk+Gd+CkF H+
  KFK38615.1 181 EKDCTHYMQTRTCKFGDSCKFDHP 204
                 678********************9 PP
2zf-CCCH331e-10230256127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++ C+++ +t  CkyG rCkF+H++
  KFK38615.1 230 PGEPDCPYYIKTQRCKYGLRCKFNHPR 256
                 5789*********************96 PP
3zf-CCCH38.51.9e-12275299327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C f+++tG Ck+G +CkF+H++
  KFK38615.1 275 EPPCTFYMKTGKCKFGLTCKFHHPK 299
                 79*********************96 PP
4zf-CCCH38.12.5e-12345371127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++ C+f+++tG CkyG++C+++H++
  KFK38615.1 345 PGEADCPFYLKTGSCKYGATCRYNHPE 371
                 57899********************96 PP
5zf-CCCH37.83.1e-12425450126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +++++C+f+++tG+Ck+ +rC+F+H+
  KFK38615.1 425 PGQPECDFYMKTGECKFVERCRFHHP 450
                 5789*********************8 PP
6zf-CCCH41.42.4e-13482504527
                 --SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                 +C+++++tGtCkyG++CkF H+p
  KFK38615.1 482 NCPYYMKTGTCKYGATCKFDHPP 504
                 6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.169178206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-5179205IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018180205IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9181204IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-5184203IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.76229257IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-4229256IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-7231256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-5234256IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4235255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601272300IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-6272299IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-10275299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6275300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5277298IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-7344371IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554344372IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-10346371IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5348372IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-5350371IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4424451IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.92424452IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9426450IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5426454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4430451IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6477504IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389477505IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-11482504IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5482504IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5483502IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MAHRHQQLYS YAALQPSSAV TPVPPPQQQS QQQQQPGKIG LTSLYGSDHY FPDTTFRFLS  60
RDGSDTLSNY SSTLTSSSSA MYHHHHLPNA TTSHLAYPQL LQHHQEAAWP PGVEVPIAAS  120
SGEPLPPGVK RTSEALYYPT LLGAHNTIGQ TEAWYTTDYY TKRPKLESTS HLPIYPQRAG  180
EKDCTHYMQT RTCKFGDSCK FDHPVWVPEG GIPDWKEAPI VPTEEYPERP GEPDCPYYIK  240
TQRCKYGLRC KFNHPRAVAE ATVESQDVLP ERPSEPPCTF YMKTGKCKFG LTCKFHHPKD  300
IQLPSTSQDN GSSEALTSDP ETTSNPHVTF APALYHNSKG LPVRPGEADC PFYLKTGSCK  360
YGATCRYNHP ERTAFIPQAA GINYPLVSPT AANLNLGMVN SAAALYQTLA QPTLGTLSAI  420
YPQRPGQPEC DFYMKTGECK FVERCRFHHP ADRLSATPKQ AAQQPNVKLS LAGYPRREGA  480
LNCPYYMKTG TCKYGATCKF DHPPPGEVLA KTTSEADAGE VADTTTQ
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK38615.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499333.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A087H9130.0A0A087H913_ARAAL; Uncharacterized protein
STRINGA0A087H9130.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)