PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK38619.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family G2-like
Protein Properties Length: 243aa    MW: 27955.7 Da    PI: 8.5042
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK38619.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.47.6e-342377155
     G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                kprlrWt eLHerFv+av++LGG+ekAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  KFK38619.1 23 KPRLRWTAELHERFVDAVAHLGGPEKATPKTIMRVMSVKGLTLYHLKSHLQKFRL 77
                79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.8312080IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-312078IPR009057Homeodomain-like
SuperFamilySSF466899.68E-172278IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-242378IPR006447Myb domain, plants
PfamPF002491.8E-72575IPR001005SANT/Myb domain
PfamPF143792.6E-14132171IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MMQPREERRA ESPSGLVLTT DPKPRLRWTA ELHERFVDAV AHLGGPEKAT PKTIMRVMSV  60
KGLTLYHLKS HLQKFRLGKQ PHKEHSHGNS INIRDTKRAY GNHNMHAASI LDLQRNVVFT  120
TPHNIGRNMN EMQMEVQRRI EEEVEVERQV NQRLEAQGKY MESMLEKACE TQEASLTKDY  180
STLFFDRTII CNNTSSLPIP WFEDHFPSSS SMDSTLHLPD INSNFSLQDS RSSITKNRTV  240
CLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-192379258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00351DAPTransfer from AT3G12730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK38619.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0707641e-143AY070764.1 Arabidopsis thaliana AT3g12730/MBK21_9 mRNA, complete cds.
GenBankAY1439161e-143AY143916.1 Arabidopsis thaliana At3g12730/MBK21_9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022544537.11e-155myb family transcription factor PHL12-like isoform X1
SwissprotQ8VYI21e-149PHLC_ARATH; Myb family transcription factor PHL12
TrEMBLA0A087H9170.0A0A087H917_ARAAL; Uncharacterized protein
STRINGA0A087H9170.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137451726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12730.11e-131G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]