PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK38737.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

LBD

Protein Properties

Length: 273aa MW: 31146.7 Da PI: 6.4262

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK38737.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.3	1.5e-39	39	138	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkCa+dC lapyfp++++++f n+hklFG+sn++k++k+l++ ++++am++++++++ara+dPv G++ +i+klq q++ +k+el+ + + KFK38737.1 39 ACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLSPPDKDAAMHTIMFQSDARANDPVGGCYDIIRKLQLQIQYTKNELEFVLQ 137 7*********************************************************************************************98877 PP DUF260 100 e 100 + KFK38737.1 138 Q 138 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.783	38	139	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-36	39	134	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MPSGKPSSVF PLHPKPTPLK PSSNTSSSSN NNNNSTNQAC AACKYQRRKC APDCLLAPYF 60 PHDRHRQFLN AHKLFGVSNI TKIIKSLSPP DKDAAMHTIM FQSDARANDP VGGCYDIIRK 120 LQLQIQYTKN ELEFVLQQLA MFRDRAHQQQ QEPHIQMQEP EDISSFSSSC NLNNNNTIPY 180 NYPLNHVQEP NLQQQQQQYC SSGNFNGLQE DMWCLQLQDS STTVNMKNGF IDECEDIKPV 240 EEVSSERHEF EHHEAFVEQR KLDLASAQYI ISS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-25	40	133	12	105	LOB family transfactor Ramosa2.1
5ly0_B	2e-25	40	133	12	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK38737.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC237328	0.0	AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_188001.1	1e-167	LOB domain-containing protein 22
Swissprot	Q9LRW1	1e-168	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A087H9D5	0.0	A0A087H9D5_ARAAL; Uncharacterized protein
STRING	A0A087H9D5	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6498	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-134	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]