PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK38980.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 237aa    MW: 26409.3 Da    PI: 4.5906
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK38980.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-1851100154
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                 + y+GVr ++ +g+Wv+eIr p++   ++r++lg+f tae+Aa+a++ a++  +
  KFK38980.1  51 PVYRGVRMRS-WGKWVSEIRQPRK---KTRIWLGTFATAEMAARAHDVAALTVK 100
                 68*****998.**********843...6*********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-1251101IPR001471AP2/ERF domain
SMARTSM003803.0E-3552115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3152110IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-2152110IPR016177DNA-binding domain
PROSITE profilePS5103222.78752109IPR001471AP2/ERF domain
PRINTSPR003678.0E-115364IPR001471AP2/ERF domain
CDDcd000183.49E-3253111No hitNo description
PRINTSPR003678.0E-117591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MTSLNSSSSP TSSSSDETTT THLSESLQYT RKRRRISSSP SPPPSSSLKH PVYRGVRMRS  60
WGKWVSEIRQ PRKKTRIWLG TFATAEMAAR AHDVAALTVK GSSAVINFPE LASLFPRPAS  120
SSPHDIQAAA AEAAAMVVDD GKMLETEIEV EEAPPSSESS YVAAEKSEER LEEIVELPNI  180
ERSYDESVTS RDADLAYSEP LDCWVYPSPP VMDFYEEIFE FNFVDLWSFP NTELVNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-18501091272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13034RKRRR
23135KRRRI
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00362DAPTransfer from AT3G16280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK38980.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV LIGHT. {ECO:0000269|PubMed:16307362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406852.11e-109ethylene-responsive transcription factor ERF036
SwissprotQ9LU183e-94ERF36_ARATH; Ethylene-responsive transcription factor ERF036
TrEMBLA0A087HA281e-170A0A087HA28_ARAAL; Uncharacterized protein
STRINGA0A087HA281e-171(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150411618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16280.11e-85ERF family protein