PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK39192.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

TCP

Protein Properties

Length: 248aa MW: 26461.6 Da PI: 9.826

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK39192.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.6	2.2e-38	32	209	3	118
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............. 88 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s +++++++ KFK39192.1 32 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASVSIRGNTNNISsttctlsssldhk 129 79*************************************************************99999777.334444444344445667777777777 PP TCP 89 .................................................kaaksaa.kskksqksaasalnlakesraka 118 a++++ +++ q+++ +al ++++++++a KFK39192.1 130 pllgsspfilgkrvradedkeetmgsfatpagfwavparpdfgqvwsfaTGAPQEMfLQQQHQQQQGAALFVHQQQQQQA 209 77778888888888887777888888888888888888888888888773333333355555555554555555555444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.7E-34	37	194	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	37	91	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MSNNIEGVMI TNGAITQQQQ QSSEGGGGAL VVKKPPAKDR HSKVDGRGRR IRMPIICAAR 60 VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTASVSIRG NTNNISSTTC 120 TLSSSLDHKP LLGSSPFILG KRVRADEDKE ETMGSFATPA GFWAVPARPD FGQVWSFATG 180 APQEMFLQQQ HQQQQGAALF VHQQQQQQAA MGEASAARVG NYLPGHLNLL ASLSGGAPGS 240 GRREDDPR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK39192.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024007014.1	1e-135	transcription factor TCP7
Refseq	XP_024007015.1	1e-135	transcription factor TCP7
Refseq	XP_024007016.1	1e-135	transcription factor TCP7
Refseq	XP_024007017.1	1e-135	transcription factor TCP7
Swissprot	Q9FMX2	1e-118	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A087HAP0	0.0	A0A087HAP0_ARAAL; Uncharacterized protein
STRING	A0A087HAP0	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-71	TCP family protein