PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK39215.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family M-type_MADS
Protein Properties Length: 378aa    MW: 43041.1 Da    PI: 9.5074
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK39215.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.98.7e-211660650
                HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                +s ++ +++kR  +++KKA+ELS+LC++ev+vi ++s+gkl++++
  KFK39215.1 16 SSTKTSSLAKREDTVFKKANELSILCGIEVCVIFYGSNGKLRTWP 60
                5677889*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-51062IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-171594IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.7971663IPR002100Transcription factor, MADS-box
PfamPF003194.6E-141959IPR002100Transcription factor, MADS-box
CDDcd002667.22E-172387No hitNo description
PRINTSPR004048.4E-62540IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-64061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MASSSSSTSA TKKKASSTKT SSLAKREDTV FKKANELSIL CGIEVCVIFY GSNGKLRTWP  60
ENREEVQKIA RRYSELSLTK RRKGSVDLVE FLEKINSDDS KDKKKKRKVM RVASSNHKFS  120
DWDPRFDSYS VEQLTELYHT LESKQTILQH RFQAVVEAQK QRMMQNTNYM AVQEQRMMTL  180
TVSTMNHLQQ HPNNVSMYPF NHGNGTFSHM PVQAPAFNQA PDFTQAPAFN QGQSLAPLPN  240
SLTIYQNPTA ENYSMLLGPQ ETPFQNMNMN MLTYNNNVND LSRQVYQNCK VDNYPGKLGV  300
QDTGMNQFQN PNMQSYNNFD VESYLRSHGI QDTGINGLQN MYGYNNNGNT NGLSHQFAQF  360
PNQRAGPAFQ FGSSHTQY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102107KKKKRK
2103108KKKRKV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK39215.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_188495.11e-110AGAMOUS-like 103
SwissprotQ9LSB21e-111AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLA0A087HAR30.0A0A087HAR3_ARAAL; Uncharacterized protein
STRINGA0A087HAR30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.17e-92AGAMOUS-like 103
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]