PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK39239.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

Protein Properties

Length: 305aa MW: 35010.1 Da PI: 4.462

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK39239.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.8	2e-18	121	210	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k +++s+v+ +l lp++f+++h +k ++ ++tl de+ +++e k+ +k++ l++GW++F +++L +gD vvF+l+ ++f +v ++r KFK39239.1 121 FVKPMLQSHVTGGFWLGLPRQFCKSHL-PK-RDEMITLIDEQDEEFETKYLADKNG----LSGGWRGFSIDHQLVDGDAVVFHLITPTTF--KVYIIR 210 89**********************5.33.5569***********777777....*********************9976666..777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.2E-21	112	212	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.63E-25	114	212	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.76E-27	119	210	No hit	No description
SMART	SM01019	2.2E-23	121	212	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-15	121	210	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.942	121	212	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MVESEQSYEQ IRLKRVEENK KRMEEFNLHK IAQSLRVFSS PAKPRTPRFP VEFAEVRRSS 60 RAKNPPPSYR ELGIEPLERP RRSYQRRDLL NRVYASDEAR VYAIDRAEML QSSLEQEFPS 120 FVKPMLQSHV TGGFWLGLPR QFCKSHLPKR DEMITLIDEQ DEEFETKYLA DKNGLSGGWR 180 GFSIDHQLVD GDAVVFHLIT PTTFKVYIIR IDGEANSDSD GSEDEENDTE SNNDSDGSED 240 EVNDSESNND SDGSEDEEND SESNNDSDGS EDEENDSESN KKQEEIALEA KQLRSSSKRK 300 RGGRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK39239.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010507495.1	1e-133	PREDICTED: B3 domain-containing protein At3g19184-like
Swissprot	Q1G3M3	1e-129	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A087HAT7	0.0	A0A087HAT7_ARAAL; Uncharacterized protein
STRING	A0A087HAT7	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-113	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]