PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK39436.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Dof
Protein Properties Length: 199aa    MW: 21756.2 Da    PI: 8.9439
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK39436.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.86.6e-402786261
      zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                ++++lkcprC+s ntkfCyynny+lsqPr+fCk+CrryWtkGGalrnvPvGgg+rkn k+
  KFK39436.1 27 EQEQLKCPRCESPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGSRKNSKR 86
                57899****************************************************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027012.6E-332985IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3013185IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103369IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-223379IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MQDPAAYYQT MMGKQLQGQG QGQQFPEQEQ LKCPRCESPN TKFCYYNNYN LSQPRHFCKS  60
CRRYWTKGGA LRNVPVGGGS RKNSKRSVSS SSSTDDSTNS NKKTKNPDPD PENKPDTDPT  120
RMLYGFPIGD QDVKGVEIGG SFSSLLASNM QLGLGGIILD GSGWDPGMGL GMGLRRSDNG  180
GGGNNNPWTD LAMNRVEKN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK39436.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406292.11e-105dof zinc finger protein DOF3.1
SwissprotQ94AR63e-90DOF31_ARATH; Dof zinc finger protein DOF3.1
TrEMBLA0A087HBD41e-145A0A087HBD4_ARAAL; Uncharacterized protein
STRINGA0A087HBD41e-145(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21270.14e-63DOF zinc finger protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]