PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK39675.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family M-type_MADS
Protein Properties Length: 351aa    MW: 38571 Da    PI: 4.3431
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK39675.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.83.8e-101452139
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                ++ie k+ r   +skR ng++ KA+ L+ L +a++av+ 
  KFK39675.1 14 EKIEKKTSRAPCYSKRCNGLFAKASQLCLLSGAQIAVLA 52
                579**********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.0E-9669IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.456651IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-5828IPR002100Transcription factor, MADS-box
CDDcd002667.93E-20885No hitNo description
SuperFamilySSF554552.62E-13880IPR002100Transcription factor, MADS-box
PfamPF003192.5E-111558IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-52843IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVKKGGLKRK IPIEKIEKKT SRAPCYSKRC NGLFAKASQL CLLSGAQIAV LATPMSENSN  60
VSFFSFGHSS VDGVVSAFLA GKSPPFPSSQ NHNHIAVCLT QKSLGLGFWW EDEALTTSQN  120
PQNLSDAVDS MSKLLKDVKQ LRHGKETKKS DPTLTTPEIG CFSDDLLQNT DTHIMPYSQD  180
FSIMDNNIAS PAENSDGVDD IMDLIDFEAT PESYDEVLKT TFESLLSDGV FKSPQELHEF  240
AATHLTNSDS MDPSIFSHSQ PVQDGDLVPG LNDDQLIDFE SLLYDGVFQS PQALQDFAAS  300
LLTCSDSDDP TMFSHSQPVQ DGDLMLQNRG FNDGHLHFSE FFNELTPIVT L
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK39675.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013705853.14e-57agamous-like MADS-box protein AGL97
RefseqXP_020881008.17e-57agamous-like MADS-box protein AGL97
TrEMBLA0A087HC230.0A0A087HC23_ARAAL; Uncharacterized protein
STRINGA0A087HC230.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.16e-48M-type_MADS family protein