PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK39761.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HSF
Protein Properties Length: 318aa    MW: 36415.9 Da    PI: 5.5172
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK39761.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1093.5e-34141062103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y++++d+ ++ li+w    nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll++i 
    KFK39761.1  14 FVLKTYQMVNDPLTDWLITWGPAHNSFIVVDPLDFSQRILPVYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEHFLRGQKHLLKNIA 101
                   9********************999*****************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    KFK39761.1 102 RRKHA 106
                   **975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.8E-5110103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.01E-3211103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-3611103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.1E-2914103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-171437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-175264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-176577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEEANNNTNM IAPFVLKTYQ MVNDPLTDWL ITWGPAHNSF IVVDPLDFSQ RILPVYFKHN  60
NFSSFVRQLN TYGFRKVDPD RWEFANEHFL RGQKHLLKNI ARRKHARGMY GQEMEDGEIV  120
REIERLKDEQ RELELEIQRM NQRIEATERR PEQMMAFLYK VVEDPDLLPR MMLEKERTKQ  180
VSDKKKRRVT ISNVKSEERE EEEDNGKVFG VVSQSPSPPE SLYRTQSPES SMGWVVPMGQ  240
FGNYETGLVG NSMISTSSSS TSSSLTSMSL PESVNGGGGC CGNIQGETRY NETATFGGVV  300
ESNPQTPPYP FSLFRGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-251110326129Heat shock factor protein 1
5d5v_B8e-251110326129Heat shock factor protein 1
5d5v_D8e-251110326129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183187KKKRR
2183188KKKRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK39761.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593227.11e-179PREDICTED: heat stress transcription factor C-1
SwissprotQ9LV521e-161HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A087HCA90.0A0A087HCA9_ARAAL; Uncharacterized protein
STRINGA0A087HCA90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-159heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]