PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK39805.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Trihelix
Protein Properties Length: 294aa    MW: 33450.1 Da    PI: 10.391
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK39805.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.11.8e-2160140286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 Wt++e+l+Li+ +++++ +++rg lk ++Wee++ +  ++ g+ rs++qC++k+e+++kr+++++++++       s +p+++ +e
  KFK39805.1  60 WTHEETLLLIDSYKDKWFAIGRGPLKSTHWEEIAVAAsARSGVDRSATQCRHKIEKMRKRFRAERQSMGPI-----SIWPFYSPME 140
                 **********************************9887999****************************84.....68***99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.27260117IPR017877Myb-like domain
PfamPF138371.2E-1860142No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MATPSPISSD SNPKSAASSP QQKQLPALNT CRSSPPSHIT VVALAASTST VARKTQPVLW  60
THEETLLLID SYKDKWFAIG RGPLKSTHWE EIAVAASARS GVDRSATQCR HKIEKMRKRF  120
RAERQSMGPI SIWPFYSPME ELDGTIPAPI SARPLTRLPP KHYQEEDEEE EQEDEDEDDE  180
RQNKSRSINH ILRRPGTVNR FAGVGGGLLS WGQRERSKRK RKEQGGERRR KGAKAVAAEI  240
RIFAERVMVM EKKKMEFARE TVKLRKEMEI KRIQLIQTSQ AQLLQFLNTA FDSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK39805.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298195.11e-146trihelix transcription factor ASIL1
TrEMBLA0A087HCF30.0A0A087HCF3_ARAAL; Uncharacterized protein
STRINGA0A087HCF30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102812232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-115Trihelix family protein