PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK39890.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GRF
Protein Properties Length: 216aa    MW: 24877.2 Da    PI: 9.2636
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK39890.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.22.9e-2371112142
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 
                 daepgrCrRtDGKkWRCs+++ +++k+CErH+hrg++rs++s
  KFK39890.1  71 DAEPGRCRRTDGKKWRCSKEASPDSKYCERHMHRGKNRSSSS 112
                 79*************************************987 PP
2QLQ58.42.2e-20742237
         QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                +FT +Q+++L++Q+l++KyLaan PvPp+Ll+ i++
  KFK39890.1  7 PFTKSQWEELENQALVFKYLAANIPVPPHLLFLIKR 42
                8******************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-13642IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.2E-15740IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.265742IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.25971115IPR014977WRC domain
PfamPF088792.9E-1972112IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MATRRIPFTK SQWEELENQA LVFKYLAANI PVPPHLLFLI KRPFLFTTSS TSSFCPHPIG  60
WNVYEMGRKV DAEPGRCRRT DGKKWRCSKE ASPDSKYCER HMHRGKNRSS SSRKPLPPPQ  120
FSVSSTPNLL VHSSSRVTSG LAMEDDCGYQ SREKKPDRHC FILGTDLMLE EKLKQREDQE  180
EEVEEQRSKR LYRFLDEWPS SSSSSSNSSV ATSLFI
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00263DAPTransfer from AT2G06200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK39890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064138e-49AC006413.4 Arabidopsis thaliana chromosome 2 clone F5K7 map ve013, complete sequence.
GenBankAY0605868e-49AY060586.1 Arabidopsis thaliana At2g06200/F5K7.4 mRNA, complete cds.
GenBankAY1255728e-49AY125572.1 Arabidopsis thaliana At2g06200/F5K7.4 mRNA, complete cds.
GenBankCP0026858e-49CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009102342.11e-87PREDICTED: growth-regulating factor 6
SwissprotQ9ZQ125e-85GRF6_ARATH; Growth-regulating factor 6
TrEMBLA0A087HCN81e-159A0A087HCN8_ARAAL; Uncharacterized protein
STRINGA0A087HCN81e-159(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141011821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06200.12e-73growth-regulating factor 6
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]