PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK40020.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HSF
Protein Properties Length: 126aa    MW: 14761.1 Da    PI: 10.8288
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK40020.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind32.62.1e-10131022102
                   HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   F k++ye ++d++ +++isws +++++f+++d++ fa+      F+  +f+     L++ gFk+v +  +        +eF +  F +gk e l k+
    KFK40020.1  13 FYKNVYEEVDDPSSDSIISWSpRSNRTFIIWDRKAFAD------FRACRFTKSFTVLKLLGFKRVGRCGGP------HMEFGNWDFVRGKPERLLKM 97 
                   8899*****************9899*************......998888655558*********999875......8******************9 PP

                   XXXXX CS
  HSF_DNA-bind  98 krkks 102
                   + k++
    KFK40020.1  98 QHKAK 102
                   99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-10894IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-69100IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.79E-10998IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.8E-813100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MVNNKYPAGL MGFYKNVYEE VDDPSSDSII SWSPRSNRTF IIWDRKAFAD FRACRFTKSF  60
TVLKLLGFKR VGRCGGPHME FGNWDFVRGK PERLLKMQHK AKRSRAKRAK ADELFRCADR  120
FQTLTI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK40020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867928.19e-29heat stress transcription factor A-4a
TrEMBLA0A087HD182e-89A0A087HD18_ARAAL; Uncharacterized protein
STRINGA0A087HD184e-90(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.16e-08HSF family protein