PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK40094.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

Trihelix

Protein Properties

Length: 113aa MW: 12688 Da PI: 4.5175

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK40094.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41	5.1e-13	42	89	1	47
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfersp 47 rW++ e+laL+++r+em++++r++ lk+plWee++++ +++ +e++ KFK40094.1 42 RWPRPETLALLRIRSEMDKAFRDSTLKAPLWEEIARRSsSRKEIEKEE 89 8**********************************9986334444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.6E-7	41	105	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MSVNSSGPLD SSGGVIGSSD EEEKDMKMEE TGDRGGGGGG NRWPRPETLA LLRIRSEMDK 60 AFRDSTLKAP LWEEIARRSS SRKEIEKEEK ELERIVYEVD KRVNGEAREE TTE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK40094.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006300884.2	3e-24	trihelix transcription factor GT-2
Refseq	XP_010533325.1	2e-24	PREDICTED: trihelix transcription factor GT-2-like, partial
Swissprot	Q39117	4e-23	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A087HD92	2e-72	A0A087HD92_ARAAL; Uncharacterized protein
STRING	A0A087HD92	3e-73	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM29141	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-17	Trihelix family protein