PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK40216.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 326aa    MW: 37012.6 Da    PI: 9.0383
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK40216.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05241263123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y+Cp+C+ +F ++  +  H+++H
  KFK40216.1 241 YTCPKCNGVFDTSQKFAAHMSNH 263
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.141241268IPR007087Zinc finger, C2H2
PROSITE patternPS000280243263IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSSIPNRFNS NGDDNMNHHG FVQNSNMIRS MFHTSDQTNY GNFFSSPPSF SRYQNSHVSS  60
SSFGLNNSHM TYHTRRNTDS VFGAECFPIR DNPQFSQVSF TQTVTNRFSA IVPTNTVFNV  120
QNDIGRVNRA VDFNNNVLNP TIRPPNFFDK PSEILNPKPL NVVFPHQNSA YRHHVNMFSS  180
SSNNNHVPQA GPSLKKSRKP TKFREEIATD DRVDFGEDGR SGDDDYDGRT HSLPYEKYGP  240
YTCPKCNGVF DTSQKFAAHM SNHYKSETSN EREMRFRARN KNKFRKLNNE IHGTSQKSTA  300
EDGVSSRGVS DVEPLQNLGM VKEELA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00264DAPTransfer from AT2G15740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK40216.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885976.11e-124uncharacterized protein LOC9319985
TrEMBLA0A087HDL40.0A0A087HDL4_ARAAL; C2h2-like zinc finger protein
STRINGA0A087HDL40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G15740.18e-99C2H2-like zinc finger protein