PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK40237.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GRAS
Protein Properties Length: 438aa    MW: 49511.7 Da    PI: 6.1446
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK40237.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS257.16.3e-79984372374
        GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 v+ L+++A++++s++l+laq +L+rl++  +sp g+p+qR+a+yf+eAL++ l       ++  + + +++++ +++++a k +s +sPi+ fsh+taN
  KFK40237.1  98 VSDLIRVADCIDSDELQLAQVILSRLNHClRSPVGRPLQRAAFYFKEALESVLIT----GSNRNQIRLSTWTEIVQRIKAIKEYSGLSPIPFFSHFTAN 192
                 678*************************99*********************9998....56667888888889************************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 q+Il++ +++  +H+iDf+i+ G+Q+++L++++         lRiT+v+s  + s+ e++ ++e+L++fA+ l+++f+++++ ++++e+l+++++r+  
  KFK40237.1 193 QTILDSQSSSMFLHVIDFEIGFGGQYASLMREIG-------FLRITAVVS--EYSAVETRLVKENLTQFAADLRIRFQIEFVSMTSFEMLSFKSIRFVD 282
                 ******************************9986.......6********..459***************************999************** PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                 gE ++V l+ +  r            + +++ ++++s++vvv+v  e         ++++  +eyy+++++sl+  ++ +  +++++E ++l+ +i  +
  KFK40237.1 283 GERIVVLLSPATIRRI----------SGFVEELRRVSSNVVVFVYCEGW-------NGISGGFEYYTTVLESLDGVVGGDLVKKKMIETFVLRDKIAFA 364
                 ********99877776..........47****************99975.......5788999*********************************999 PP

        GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 v +  +    r  ++++Wre++ +aG++ vpls+++  qa+++++kv++ g++v +++g+lvl+W+++pLv++SaWr
  KFK40237.1 365 VETVSK----RGGEMMTWREAFCAAGMRLVPLSHFVDFQAECIVEKVQVSGFHVAKRHGELVLYWREKPLVATSAWR 437
                 988776....588899************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.16371417IPR005202Transcription factor GRAS
PfamPF035142.2E-7698437IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MRVPASSDSN SNLVIGYNEP TSVLDLRRSP SPTNVIHQTV DENGLCSHHH VMHSIDWDSI  60
MKELELDDET TPTLKSNLPL NTIFSIDPPP NTNNNDYVSD LIRVADCIDS DELQLAQVIL  120
SRLNHCLRSP VGRPLQRAAF YFKEALESVL ITGSNRNQIR LSTWTEIVQR IKAIKEYSGL  180
SPIPFFSHFT ANQTILDSQS SSMFLHVIDF EIGFGGQYAS LMREIGFLRI TAVVSEYSAV  240
ETRLVKENLT QFAADLRIRF QIEFVSMTSF EMLSFKSIRF VDGERIVVLL SPATIRRISG  300
FVEELRRVSS NVVVFVYCEG WNGISGGFEY YTTVLESLDG VVGGDLVKKK MIETFVLRDK  360
IAFAVETVSK RGGEMMTWRE AFCAAGMRLV PLSHFVDFQA ECIVEKVQVS GFHVAKRHGE  420
LVLYWREKPL VATSAWRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-1810343625378Protein SCARECROW
5b3h_A6e-1810343624377Protein SCARECROW
5b3h_D6e-1810343624377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK40237.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297491.10.0scarecrow-like protein 15
SwissprotO232101e-176SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A087HDN50.0A0A087HDN5_ARAAL; Uncharacterized protein
STRINGA0A087HDN50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-178GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]