PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK40238.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 220aa    MW: 25524.5 Da    PI: 5.468
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK40238.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94.2e-1963116457
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                 ++++t+eq++ Le  F  ++++ +e++ +LA +lgL+ rqV vWFqNrRa++k+
  KFK40238.1  63 KRKLTDEQVRMLEISFGDEHKLETERKDRLALELGLDPRQVAVWFQNRRARWKN 116
                 4589************************************************95 PP
2HD-ZIP_I/II119.32e-3862153293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +kr+l++eqv++LE sF  e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE +y++Lk+ +++++ e++rL++ev +L+e+l e
   KFK40238.1  62 RKRKLTDEQVRMLEISFGDEHKLETERKDRLALELGLDPRQVAVWFQNRRARWKNKRLEDEYTKLKNVHENVVVEKCRLDSEVLNLKEQLYE 153
                  8***************************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.03E-1756118IPR009057Homeodomain-like
PROSITE profilePS5007116.34257117IPR001356Homeobox domain
SMARTSM003894.2E-1860121IPR001356Homeobox domain
CDDcd000862.72E-1662118No hitNo description
PfamPF000462.2E-1663116IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1964123IPR009057Homeodomain-like
PRINTSPR000313.6E-58897IPR000047Helix-turn-helix motif
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
PRINTSPR000313.6E-597113IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MNNQNVDDHN LLLISQLYPS VYTPFVPQQA EESKPAPRRR RRKNKSAAVA EEGGDGSSGW  60
FRKRKLTDEQ VRMLEISFGD EHKLETERKD RLALELGLDP RQVAVWFQNR RARWKNKRLE  120
DEYTKLKNVH ENVVVEKCRL DSEVLNLKEQ LYEAEREIQR LAQRVEGTSS NSPISLSISV  180
EANHTTPFFG DYEIGDDGGG YENLFYSQDY IGLEWMGPFS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK40238.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298526.11e-126homeobox-leucine zipper protein ATHB-21 isoform X1
SwissprotQ9ZU701e-126ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A087HDN61e-162A0A087HDN6_ARAAL; Uncharacterized protein
STRINGA0A087HDN61e-163(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.11e-109homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]