PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK40554.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 247aa    MW: 27841.9 Da    PI: 8.4135
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK40554.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.6e-1367119155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +++ h  +Er+RR+++   f  Lr+llP       ++K s ++   +Av+YIk+ q
  KFK40554.1  67 KKMRHRDIERQRRQEVSALFKSLRTLLPFqY---IQGKRSTSDHISQAVNYIKDIQ 119
                 6889*************************66...*******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1463134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-1164123No hitNo description
PROSITE profilePS5088814.01166118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-1167136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-1067119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-472124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDSVPSMLMP DLPYDDGLLF SDSFLLSPFV SYENHDVCNP VTNKNVETNK KRSLCEASKK  60
EDDRESKKMR HRDIERQRRQ EVSALFKSLR TLLPFQYIQG KRSTSDHISQ AVNYIKDIQN  120
NIKELNEKKN RIKKLSTSTE ECTSSLSSSS LSTSTLSSSC SCVGDKHITV VVMPCLVGVE  180
IIISCCLGQN KSCLSSVLQM LAQEQRLSVV SCLSKRLNQR FIHTIVSQVD NGIKINVSEL  240
QDKIVNM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK40554.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935162e-77AB493516.1 Arabidopsis thaliana At1g62975 mRNA for hypothetical protein, partial cds, clone: RAAt1g62975.
GenBankAF5063692e-77AF506369.1 Arabidopsis thaliana basic helix-loop-helix transcription factor bHLH125 mRNA, complete cds.
GenBankAK2280362e-77AK228036.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL14-54-L04.
GenBankBT0064082e-77BT006408.1 Arabidopsis thaliana At1g62975 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_683462.11e-121basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ9LQ081e-122BH125_ARATH; Transcription factor bHLH125
TrEMBLA0A087HEK21e-179A0A087HEK2_ARAAL; Uncharacterized protein
STRINGA0A087HEK21e-179(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62975.11e-105bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]