PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK40835.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family M-type_MADS
Protein Properties Length: 271aa    MW: 30097 Da    PI: 4.5299
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK40835.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.62e-101057450
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.klyeys 50
                e k+n++  f +R  g  KKA ELSvLC+  v  i f++++  l+ ++
  KFK40835.1 10 EKKRNKTMFFKQRFPGFKKKATELSVLCGNSVGFICFGPDNdSLHVWP 57
                667788888888999***********************9872577776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.367150IPR002100Transcription factor, MADS-box
CDDcd002663.08E-19384No hitNo description
SuperFamilySSF554551.57E-13880IPR002100Transcription factor, MADS-box
PfamPF003192.7E-101054IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAKKPSDDLE KKRNKTMFFK QRFPGFKKKA TELSVLCGNS VGFICFGPDN DSLHVWPENP  60
QTLDKLVAKF DEQSDLKRKR HGCDLNDFPH FEGLPVEELM THLSQLESQL VGVGQKKLQI  120
LTKTIKKASS DDCPPPRVGK IGDVDKLEDD LKVSDTKLGF GGAFDELGYV VRGSSTTTFD  180
ATVSNLQPTD DDGALGMMET QDYTPLTLGF SGDDSQLYPD PFTLPMGIWD MDLSSTLADS  240
FMTTACQTPI ADDWGNLQAF HTQPFLWEPL S
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK40835.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026845e-32CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT2K105e-32AC005966.2 Arabidopsis thaliana chromosome 1 BAC T2K10 sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888172.14e-61agamous-like MADS-box protein AGL49
SwissprotQ9ZUI98e-60AGL49_ARATH; Agamous-like MADS-box protein AGL49
TrEMBLA0A087HFD30.0A0A087HFD3_ARAAL; Uncharacterized protein
STRINGA0A087HFD30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11232928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60040.15e-56AGAMOUS-like 49
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]