PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK40869.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family M-type_MADS
Protein Properties Length: 134aa    MW: 15628.1 Da    PI: 9.5257
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK40869.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.61.5e-087362250
                HHHHHHHHHHT-EEEEEEE-TTS.EEEEEE CS
      SRF-TF 22 KKAeELSvLCdaevaviifsstg.klyeys 50
                KKA ELS+LC+  v  i +++++  l+ ++
  KFK40869.1  7 KKATELSILCGNSVGFICYGPDNdSLHVWP 36
                9*******************9872577776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003198.0E-7433IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-8449IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MYLGFKKKAT ELSILCGNSV GFICYGPDND SLHVWPENPQ TLYKLVAKFD GQRKRHCCDL  60
NDFPHFEGFS VDELMTHLAH LDSQLVGVSQ KKLHILTKTI KNASSYDRPA RLDKLVSEPM  120
WRNWKMMLRF RRLN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK40869.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176212.18e-40AGAMOUS-like 49
SwissprotQ9ZUI97e-41AGL49_ARATH; Agamous-like MADS-box protein AGL49
TrEMBLA0A087HFG76e-97A0A087HFG7_ARAAL; Uncharacterized protein
STRINGA0A087HFG71e-97(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11232928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60040.13e-43AGAMOUS-like 49
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]