PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK40940.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GeBP
Protein Properties Length: 352aa    MW: 39534.3 Da    PI: 8.1649
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK40940.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573105.15.3e-33132230297
      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifelskkiW 96 
                 lfqrl+se+Dei+lLqG++df+ak+g ++++d+daf+++vkk isf++++sql +Ki+rLKkKf + vk+     ks++e++fsk+ dqk+fels++iW
  KFK40940.1 132 LFQRLFSESDEIALLQGILDFNAKKG-DYQKDMDAFVDYVKKLISFNANRSQLKTKIQRLKKKFANIVKNslkkGKSEDEIVFSKDLDQKAFELSRQIW 229
                 69************************.8999**********************************9998877778999********************* PP

      DUF573  97 g 97 
                 g
  KFK40940.1 230 G 230
                 8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.0E-26133230IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAPKQPEEKP HIPSSSEEDE SGSSEEQSES TREDSKKDDS SDDENESKPT QTSVVVPVST  60
KKLEPDSESE SESESDSEPI QKMTSGSITT KSTLPESKRK ETEDVLDVKK NKKMKTGDGE  120
VKKISGDEAK LLFQRLFSES DEIALLQGIL DFNAKKGDYQ KDMDAFVDYV KKLISFNANR  180
SQLKTKIQRL KKKFANIVKN SLKKGKSEDE IVFSKDLDQK AFELSRQIWG NNGVQVSKSR  240
KKKHEEETPR EFKPLLRSSK KRQETVKADA RDTSLELSSF FKTENVSAFS LDESALSAVW  300
GTVKDGSKKR EMEERLKKLK ATQGDLCMQR TGLVADSAKL IFKDKASSSS CM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK40940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609353.12e-91PREDICTED: mediator-associated protein 1-like
SwissprotQ9SB422e-83STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLA0A087HFN80.0A0A087HFN8_ARAAL; Uncharacterized protein
STRINGA0A087HFN80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.12e-76DNA-binding storekeeper protein-related transcriptional regulator