PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK40965.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GeBP
Protein Properties Length: 287aa    MW: 32804.4 Da    PI: 9.4897
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK40965.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57390.42e-2878160297
      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 ++qrlwseeDe++lLqGlid k++tgk+     ++fye +k+sisf+v ++q++eKir+LK K+ +k+k         fs++h++k+f+ls+ iWg
  KFK40965.1  78 HVQRLWSEEDELALLQGLIDSKTDTGKK-----EGFYESLKDSISFDVRRDQFIEKIRKLKIKYVGKKKY--------FSNAHEKKCFDLSMHIWG 160
                 78************************65.....9********************************9998........*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.9E-2280160IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAKKRFNLPQ ISDLASCKPK KDKKAVDYGE AQSSMKSSMK RKGAGTSKKA HAKRAKKDSK  60
KISEEDDTVM VEESSKKHVQ RLWSEEDELA LLQGLIDSKT DTGKKEGFYE SLKDSISFDV  120
RRDQFIEKIR KLKIKYVGKK KYFSNAHEKK CFDLSMHIWG PNGFAVESTE KSKNMQTLKE  180
PLLFSSPNGK TGDDTSYRVD VEEEESPLGS DFNYKSYIAR WVKSVGGDED SVEMAWSLMP  240
METRKEMEKK CNVVQAKEFD FLTDKVDLLR LVFSATRQVF STMTESS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK40965.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A087HFR30.0A0A087HFR3_ARAAL; Uncharacterized protein
STRINGA0A087HFR30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.16e-36DNA-binding storekeeper protein-related transcriptional regulator