PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41051.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GRAS
Protein Properties Length: 506aa    MW: 55966.2 Da    PI: 5.2342
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41051.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4355.7e-1331465001374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshlta 98 
                 lv++Ll+cAeav+++dl+la+al++++  las+++ +++++a+yf+e+La+r++r    +y    p+++    +s+    l++ f+e++P+lkf+h+ta
  KFK41051.1 146 LVHALLACAEAVQQNDLKLADALVKHVGLLASSQAGAVRKVATYFAEGLARRIYR----IY----PRDDVG--MSSFSDTLQVhFYEACPYLKFAHFTA 234
                 689****************************************************....44....444432..33333333334*************** PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 NqaIlea++++e+vH+iD++++qGlQWpaL+qaLa Rp+gpp +R+Tg+gs    s e+++e+g++L ++A+++g++fef+ ++ ++l dl++e+L+++
  KFK41051.1 235 NQAILEAFATAEKVHVIDLGLNQGLQWPALIQALALRPGGPPDFRLTGIGS----SLESIQEVGWKLGHLARTIGMNFEFKSIALNNLYDLKPEMLEIR 329
                 ***************************************************....9******************************************* PP

        GRAS 198 p.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +  E++aVn+v++lh+ll++++s+++    vL ++ks++P++++vveqea+hn+  Fl+rf+e+l+yys+lfdsle       ++++++++ +lgr+i 
  KFK41051.1 330 TgSESVAVNSVFELHHLLARTGSIDK----VLLTIKSINPDIMTVVEQEANHNGDVFLDRFTESLHYYSSLFDSLEGP----PSQDRVMSELYLGRQIL 420
                 *99***************99999999....*********************************************999....46677788888****** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n vaceg++r+erhetl +Wr+r+++aGFkpv+++++a+kqa++l++ ++  dgy+vee++g+l+lgW++r L+++SaWr
  KFK41051.1 421 NFVACEGEDRVERHETLVQWRNRFGSAGFKPVNIGSNAYKQASMLVALYAgADGYKVEENEGCLLLGWQTRLLIATSAWR 500
                 *******************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120418.0E-313295IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011292.2E-3732101No hitNo description
PROSITE profilePS5098565.823120479IPR005202Transcription factor GRAS
PfamPF035142.0E-130146500IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0042538Biological Processhyperosmotic salinity response
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MKREHNHRDS SAGEVGSSSK TLGFKEEGTG VDELLVVLGY KVRSADMADV AHKLEQLEMV  60
LGDGISHLSD DIVHYNPSDL SGWVDNMLSD LDPTPNQDKS DHDSEYDLSA IPGSAAYPRG  120
KRTRVESDST TRSVLILDSQ ETGVRLVHAL LACAEAVQQN DLKLADALVK HVGLLASSQA  180
GAVRKVATYF AEGLARRIYR IYPRDDVGMS SFSDTLQVHF YEACPYLKFA HFTANQAILE  240
AFATAEKVHV IDLGLNQGLQ WPALIQALAL RPGGPPDFRL TGIGSSLESI QEVGWKLGHL  300
ARTIGMNFEF KSIALNNLYD LKPEMLEIRT GSESVAVNSV FELHHLLART GSIDKVLLTI  360
KSINPDIMTV VEQEANHNGD VFLDRFTESL HYYSSLFDSL EGPPSQDRVM SELYLGRQIL  420
NFVACEGEDR VERHETLVQW RNRFGSAGFK PVNIGSNAYK QASMLVALYA GADGYKVEEN  480
EGCLLLGWQT RLLIATSAWR INRVEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-6914149914378Protein SCARECROW
5b3h_A4e-6914149913377Protein SCARECROW
5b3h_D4e-6914149913377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Has overlapping but distinct roles in GA signaling compared to RGA and GAI. Regulates the floral development. May also participate in seed germination and in ovule and anther development. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269|PubMed:11826301, ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596, ECO:0000269|PubMed:14973286, ECO:0000269|PubMed:15128937, ECO:0000269|PubMed:16034591}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41051.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated upon GA treatment.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391387.10.0DELLA protein RGL1
SwissprotQ9C8Y30.0RGL1_ARATH; DELLA protein RGL1
TrEMBLA0A087HFZ90.0A0A087HFZ9_ARAAL; Uncharacterized protein
STRINGA0A087HFZ90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.10.0RGA-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yan A, et al.
    AtEXP2 is involved in seed germination and abiotic stress response in Arabidopsis.
    PLoS ONE, 2014. 9(1): p. e85208
    [PMID:24404203]
  3. Gallego-Giraldo C, et al.
    Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis.
    Plant J., 2014. 79(6): p. 1020-1032
    [PMID:24961590]
  4. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  5. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  6. Li W,Wang H,Yu D
    Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    Mol Plant, 2016. 9(11): p. 1492-1503
    [PMID:27592586]
  7. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]
  8. Chen L,Xiang S,Chen Y,Li D,Yu D
    Arabidopsis WRKY45 Interacts with the DELLA Protein RGL1 to Positively Regulate Age-Triggered Leaf Senescence.
    Mol Plant, 2017. 10(9): p. 1174-1189
    [PMID:28735023]
  9. Zhang L,Chen L,Yu D
    Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering.
    Plant Physiol., 2018. 176(1): p. 790-803
    [PMID:29133369]