PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41108.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family LBD
Protein Properties Length: 240aa    MW: 26362 Da    PI: 7.3207
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41108.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.31.4e-294106198
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C ++p++     +++q++++ +++k++G++ +++ll+a p++ r+++++sl+yeA+ r+ +P+ G+vg++++++++l+q+++e+
  KFK41108.1   4 SCNGCRVLRKGCSENCSIRPCLqwiksAESQANATVFLAKFYGRAGLMNLLNAGPDHLRPAIFRSLLYEACGRIMNPICGSVGLLWSGNWHLCQAAVEA 102
                 6*********************9999777889*****************************************************************99 PP

      DUF260  95 allk 98 
                 ++++
  KFK41108.1 103 VMRG 106
                 8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.8793109IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-244104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLNAGPDH  60
LRPAIFRSLL YEACGRIMNP ICGSVGLLWS GNWHLCQAAV EAVMRGSPVT PISYDAAATG  120
QASPFNTNKL FDIRHVSSNV KSRGACKEDR NVRSSLSHES SLSHESSVVK DERSMVSSEE  180
TTEEEPAWIG LELTLGLEPP RARGSHVVVP MKKRKLEDRC GTSEDEDDTC RIELGLVCSE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41108.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013688081.11e-136LOB domain-containing protein 40
SwissprotQ9ZW961e-124LBD40_ARATH; LOB domain-containing protein 40
TrEMBLA0A087HG561e-177A0A087HG56_ARAAL; Uncharacterized protein
STRINGA0A087HG561e-178(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152481518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.11e-123LOB domain-containing protein 40