PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41127.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family TCP
Protein Properties Length: 175aa    MW: 20019.4 Da    PI: 4.824
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41127.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.97.1e-3838149289
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssasnsss 87 
                 a+kkdrhskihT++g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++ +aik+ ++              +           ++++++++++
  KFK41127.1  38 AVKKDRHSKIHTAQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAIKKVVQGsklnnddgdfvnnG----------GDVEEEEEEEE 126
                 89************************************************************9955533322222210..........11111111111 PP

         TCP  88 g.....................k 89 
                 +                     +
  KFK41127.1 127 EeddvddgdksfvyglspeyceE 149
                 11222333333444444444441 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.2E-3639135IPR005333Transcription factor, TCP
PROSITE profilePS5136934.8214098IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MVSAVPESLM DYMAFNSNNT VNQQGFEFPE VSREIKKAVK KDRHSKIHTA QGLRDRRVRL  60
SIGIARQFFD LQDMLGFDKA SKTLDWLLKK SRKAIKKVVQ GSKLNNDDGD FVNNGGDVEE  120
EEEEEEEEDD VDDGDKSFVY GLSPEYCEEE VVCEVKKAEK RKKKITDTNF AKGFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-154598154Putative transcription factor PCF6
5zkt_B8e-154598154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in petal morphogenesis. {ECO:0000269|PubMed:17940055}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41127.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001154454.14e-84TCP family transcription factor
RefseqNP_001322103.14e-84TCP family transcription factor
SwissprotQ9FYG76e-85TCP1_ARATH; Transcription factor TCP1
TrEMBLA0A087HG751e-125A0A087HG75_ARAAL; Uncharacterized protein
STRINGA0A087HG751e-125(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67332744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.25e-63TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]