PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41181.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GeBP
Protein Properties Length: 309aa    MW: 35029.9 Da    PI: 10.0829
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41181.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731025.2e-3250148297
      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifelskkiW 96 
                 lfqrl+se+Dei+lLqG++df+ak+g ++++++daf+++vkk i+f++++sql +Ki+rLKkKf + vk+     ks++e++fsk+ dqk+fels++iW
  KFK41181.1  50 LFQRLFSESDEIALLQGILDFNAKKG-DYQKEMDAFVDYVKKLINFNANRSQLKTKIQRLKKKFANIVKNslkkGKSEDEIVFSKDPDQKAFELSRQIW 147
                 69************************.8999**********************************9998877778999********************* PP

      DUF573  97 g 97 
                 g
  KFK41181.1 148 G 148
                 8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.2E-2651148IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MTSGSITTKS TLPESKRKET EDVVDVKENK KMKTGDGEVK KISGDEAKLL FQRLFSESDE  60
IALLQGILDF NAKKGDYQKE MDAFVDYVKK LINFNANRSQ LKTKIQRLKK KFANIVKNSL  120
KKGKSEDEIV FSKDPDQKAF ELSRQIWGNN GVQVLKSRKK KKHEEETPRE FNLVPRSSKK  180
RQETVKADAR DTSLELSSFV KTENVSAFSL DESALSAVWG TVKDGSKKRE MEERLKKLKA  240
MQGELCMQRT GLVADSAKLI FKDKASSSSG VYCYTENLRS HAVHELSHTE TYANLARVAT  300
VDVPRNLYE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41181.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013609353.17e-92PREDICTED: mediator-associated protein 1-like
SwissprotQ9SB421e-82STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLA0A087HGC90.0A0A087HGC9_ARAAL; Uncharacterized protein
STRINGA0A087HGD00.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.12e-76DNA-binding storekeeper protein-related transcriptional regulator