PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK41238.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

bHLH

Protein Properties

Length: 205aa MW: 23596 Da PI: 7.0424

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK41238.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.3e-05	89	131	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++E+rRR+ i+++ e L ++ P++ a+s +K Le eY+k L KFK41238.1 89 IMEKRRRKLIKDKVEVLEKMTPNC--AKSDIATK---LESIAEYMKTL 131 69*********************7..35555555...55555665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.518	82	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.93E-9	85	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.3E-10	86	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.56E-5	89	136	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MEINNLKVGT TQHDELSSLS EMFSSFCSED HDSLNPLQEI FGTKSTLRVV ISEPKDVTEK 60 PQEDKDTGDQ CNKSNRPLKR TRSMDYRMIM EKRRRKLIKD KVEVLEKMTP NCAKSDIATK 120 LESIAEYMKT LKHQQEVMFM AYTEAAGYMQ PYYGAQQAPM MSPWGYYAPP GTPMMPQQNV 180 PYIPQFHQVH DVTAPPNQTG PIYKF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in somatic embryogenesis. Acts as positive regulator of somatic embryo formation (PubMed:23874927, PubMed:26973252). Acts as positive regulator of ECP63 by targeting its promoter and inducing its expression (PubMed:26973252). {ECO:0000269\|PubMed:23874927, ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK41238.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018468824.1	8e-76	PREDICTED: transcription factor bHLH109
Swissprot	Q5XVH0	4e-62	BH109_ARATH; Transcription factor bHLH109
TrEMBL	A0A087HGI6	1e-153	A0A087HGI6_ARAAL; Uncharacterized protein
STRING	A0A087HGI6	1e-154	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15032	14	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68240.1	4e-55	bHLH family protein

Publications ? help Back to Top
Gliwicka M,Nowak K,Balazadeh S,Mueller-Roeber B,Gaj MD Extensive modulation of the transcription factor transcriptome during somatic embryogenesis in Arabidopsis thaliana. PLoS ONE, 2013. 8(7): p. e69261 [PMID:23874927] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252]