PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK41287.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

bZIP

Protein Properties

Length: 450aa MW: 50631.7 Da PI: 6.1551

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK41287.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.8	7.2e-11	164	208	6	47
HHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNkaLkk 47 rr+++NReAAr+sR+RKka++++Le+ + ++Le+e k+ ++ KFK41287.1 164 SLRRLAQNREAARKSRLRKKAYVQQLENsriRLAQLEEELKRVRQ 208 579***********************9744477777777776664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.5E-8	155	209	No hit	No description
SMART	SM00338	5.6E-6	159	222	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.324	161	205	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.06E-6	163	205	No hit	No description
Pfam	PF00170	1.3E-7	163	207	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	166	181	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.3E-27	249	322	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MQSSFKTVPF NPDFYSQPSF FFRGDSCLEE FHQQNNNGFH HDQTLVGLSP NVTVASNNLH 60 YATFDTGMEC GLRERLERED ECLDTGQLVF QKGTRLVGGG EVNSTLENWC DSVSAMADNS 120 QHTTDTSTDI DTDDKTQLNG AYQGMVLATD CSDQSKVKSG EQRSLRRLAQ NREAARKSRL 180 RKKAYVQQLE NSRIRLAQLE EELKRVRQQG SLAENSVSGN HNTHVAAGNG AFSFELEYAR 240 WMEDHQRLIN DLRAGVNSQL GDNDLRLLVD AVMSHYDEIF RLKGIGTKVD VFHMLSGMWQ 300 TPAERFFMWL GGFRSSELLK ILGNHVDPLT DQQLIGICNL QQSSQQAEDA LSQGMEALQQ 360 SLLETLSSAS MGPNSSANVA DYMGHMAMAM GKLGTLENFL RQADLLRQQT LQQLHRILTT 420 RQAARAFLVI HDYISRLRAL SSLWLARPRD

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MQSSFKTVPF NPDFYSQPSF FFRGDSCLEE FHQQNNNGFH HDQTLVGLSP NVTVASNNLH  60
YATFDTGMEC GLRERLERED ECLDTGQLVF QKGTRLVGGG EVNSTLENWC DSVSAMADNS  120
QHTTDTSTDI DTDDKTQLNG AYQGMVLATD CSDQSKVKSG EQRSLRRLAQ NREAARKSRL  180
RKKAYVQQLE NSRIRLAQLE EELKRVRQQG SLAENSVSGN HNTHVAAGNG AFSFELEYAR  240
WMEDHQRLIN DLRAGVNSQL GDNDLRLLVD AVMSHYDEIF RLKGIGTKVD VFHMLSGMWQ  300
TPAERFFMWL GGFRSSELLK ILGNHVDPLT DQQLIGICNL QQSSQQAEDA LSQGMEALQQ  360
SLLETLSSAS MGPNSSANVA DYMGHMAMAM GKLGTLENFL RQADLLRQQT LQQLHRILTT  420
RQAARAFLVI HDYISRLRAL SSLWLARPRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK41287.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118286	0.0	AK118286.1 Arabidopsis thaliana At1g68640 mRNA for putative bZip transcription factor PERIANTHIA (PAN) / AtbZip46, complete cds, clone: RAFL19-57-M21.
GenBank	BT008586	0.0	BT008586.1 Arabidopsis thaliana clone U50929 putative bZIP transcription factor, PERIANTHIA (At1g68640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006300957.1	0.0	transcription factor PERIANTHIA isoform X1
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A087HGN5	0.0	A0A087HGN5_ARAAL; Uncharacterized protein
STRING	A0A087HGN5	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	0.0	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]