PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41342.1
Common NameSPL6
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family SBP
Protein Properties Length: 383aa    MW: 43010.9 Da    PI: 7.315
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41342.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.85.5e-42111186277
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 Cqv gC++dls  k+y++rh+vCe+hsk++vv+vsgleqrfCqqCsrfh lsefD++krsCrrrLa+hnerrrk++
  KFK41342.1 111 CQVYGCNMDLSFSKDYYKRHRVCEAHSKTSVVIVSGLEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRKPS 186
                 **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.8E-33106172IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.154108185IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-39109188IPR004333Transcription factor, SBP-box
PfamPF031105.7E-32111184IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDSWSYGRSV FLANELENDD HVLMSNGFSD VSIAKVASSS SCVVPSSLFP VEEEENEFSK  60
FSSVATEELA RIDFKLSSFL DYGNDDTSTR AFALRGKKSR ALNSCSQKPL CQVYGCNMDL  120
SFSKDYYKRH RVCEAHSKTS VVIVSGLEQR FCQQCSRFHF LSEFDDGKRS CRRRLAGHNE  180
RRRKPSLYFL PGKRHKLLRT SQGNTFLENS LINDFSLAES FPGSLLYRVM DEHDHRASRL  240
VSFKDEPTCS MFPEIGQNKT SYAPEASGVS SIWDLHEAVA SRSTCALSLL SAQSQQHFSK  300
NPNTAFSITQ PNANLTHSPG DNHQMKPLID PGKNSSGSST CNGKGSSTVD LMQLSSHLQR  360
IEQQRNYTDE VKQEYNELYF PGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-301101841084squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41342.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8159530.0KC815953.1 Arabis alpina SQUAMOSA promoter binding protein-like protein 6 (SPL6) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006391054.10.0squamosa promoter-binding-like protein 6
RefseqXP_024007394.10.0squamosa promoter-binding-like protein 6
RefseqXP_024007399.10.0squamosa promoter-binding-like protein 6
SwissprotQ94JW80.0SPL6_ARATH; Squamosa promoter-binding-like protein 6
TrEMBLS4WT080.0S4WT08_ARAAL; SQUAMOSA promoter binding protein-like protein 6
STRINGS4WT080.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-179SBP family protein
Publications ? help Back to Top
  1. Bergonzi S, et al.
    Mechanisms of age-dependent response to winter temperature in perennial flowering of Arabis alpina.
    Science, 2013. 340(6136): p. 1094-7
    [PMID:23723236]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]