PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK41379.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

Dof

Protein Properties

Length: 379aa MW: 42049.6 Da PI: 8.0773

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK41379.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.9	2.2e-38	122	181	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s+ntkfCyynny+++qPryfC++C+ryWt+GG++rnvPvG+grrknk + KFK41379.1 122 PDKLLPCPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRNVPVGSGRRKNKGW 181 78999****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	119	179	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-31	124	179	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.537	126	180	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	128	164	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MSKSRDTEIK LFGRTITSLF PVNNHYDPSS LSPVSDQSKE DDSSSSSSSC SPLIGPDKVL 60 TDKTEQENCK VKDPYVLSDL NEQPEAASEI SSPRSCKTNC DQQSEITTST SADKPTTALK 120 KPDKLLPCPR CESANTKFCY YNNYNVNQPR YFCRNCQRYW TAGGSMRNVP VGSGRRKNKG 180 WGTSSNHYLQ VTQEDYDNSG TILSFGSSES SVTEIGKHGD TKITADSASQ EHKTHQGFLP 240 PQVMIPNSSS PWPYQWTPTG PTATFYPIPF YWGCTVPILP TSETSPSLGK RSRDQTEGEI 300 KDTTTTITRA RLVSESLRIS EATKSATKPE KRTLGFSLFN GFETKDSNRR NLVPETSLNL 360 QANPAAMSRA MNFRESMQQ

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MSKSRDTEIK LFGRTITSLF PVNNHYDPSS LSPVSDQSKE DDSSSSSSSC SPLIGPDKVL  60
TDKTEQENCK VKDPYVLSDL NEQPEAASEI SSPRSCKTNC DQQSEITTST SADKPTTALK  120
KPDKLLPCPR CESANTKFCY YNNYNVNQPR YFCRNCQRYW TAGGSMRNVP VGSGRRKNKG  180
WGTSSNHYLQ VTQEDYDNSG TILSFGSSES SVTEIGKHGD TKITADSASQ EHKTHQGFLP  240
PQVMIPNSSS PWPYQWTPTG PTATFYPIPF YWGCTVPILP TSETSPSLGK RSRDQTEGEI  300
KDTTTTITRA RLVSESLRIS EATKSATKPE KRTLGFSLFN GFETKDSNRR NLVPETSLNL  360
QANPAAMSRA MNFRESMQQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00223	DAP	Transfer from AT1G69570	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK41379.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006390998.1	0.0	cyclic dof factor 5
Swissprot	Q9SEZ3	0.0	CDF5_ARATH; Cyclic dof factor 5
TrEMBL	A0A087HGX7	0.0	A0A087HGX7_ARAAL; Dof zinc finger protein
STRING	A0A087HGX7	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13090	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69570.1	0.0	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689] Martín G, et al. Circadian Waves of Transcriptional Repression Shape PIF-Regulated Photoperiod-Responsive Growth in Arabidopsis. Curr. Biol., 2018. 28(2): p. 311-318.e5 [PMID:29337078]