PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41460.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 559aa    MW: 62244.7 Da    PI: 7.3634
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41460.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.88e-1440953310128
         NAM  10 tdeelvveyLkkkvegkkleleevikev..diykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglk 103
                 ++ee++ +yL++kv+g+ +++  +i e+  d+y+ ePw Lp+  + + + +ew++F kr++ky     ++ +  +g W       ++ s+ +ge++g  
  KFK41460.1 409 SNEEIIERYLRPKVDGELTTMPGFIVELeeDLYTREPWLLPHvtHPTLNPREWFYFGKRNRKYLM---AEGVHFEGSWVPIQGRCPIRSNeTGEAIGGT 504
                 689**************98887777766669**********5233333777************75...4445568****99999***997555555544 PP

         NAM 104 ktLvfy....kgrapkgektdWvmheyrl 128
                   + +     + ++++   ++W+m eyrl
  KFK41460.1 505 MRFRYAfrkkEDKDSDMLWSNWFMREYRL 533
                 44444443323344455589*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.160.20.101.4E-13347430IPR012334Pectin lyase fold
SuperFamilySSF511266.56E-12051407IPR011050Pectin lyase fold/virulence factor
PfamPF002956.7E-9286400IPR000743Glycoside hydrolase, family 28
SMARTSM00710100186235IPR006626Parallel beta-helix repeat
SMARTSM0071046236257IPR006626Parallel beta-helix repeat
PROSITE patternPS005020266279IPR000743Glycoside hydrolase, family 28
SMARTSM007101300318339IPR006626Parallel beta-helix repeat
PROSITE profilePS5100524.098400553IPR003441NAC domain
PfamPF023651.6E-7409533IPR003441NAC domain
SuperFamilySSF1019412.62E-21409552IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071555Biological Processcell wall organization
GO:0005576Cellular Componentextracellular region
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0004650Molecular Functionpolygalacturonase activity
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MLAMLIVTSS GTEYRELDIL GDLENLDVPQ DDIDEDMMIF DFSCLTSQNS GKNLVNVDSF  60
GAVGDGVSDD TQAFTSAWKI ACSAPKSVLL VPQGRRYLVN ATKFNGPCQE KLIIQIDGTI  120
VAPDDPSQWN PRFQRVWLEF TKLQGVAFQG NGVIDGSGAK WWAASCKKNK TNPCIGAPTA  180
LTIDSSSGVY VRGLTIRNSQ QMHMSISRSN TVRISRVMVT SPGDSPNTDG IHITASTNVV  240
VQDCKISTGD DCVSIVNEST RIKMKKIYCG PGHGISIGSL GKGNSTATVT AIVLDTAYLK  300
NTTNGLRIKT WQGGNGFVKG VRFENVVMEN VSNPIIIDQF YCDSPSTCQN QTSAVHITEV  360
MYRNITGTTK SKKAIKFACS DAVPCSHIVL NNVNLEGRDG NGEVRSRISN EEIIERYLRP  420
KVDGELTTMP GFIVELEEDL YTREPWLLPH VTHPTLNPRE WFYFGKRNRK YLMAEGVHFE  480
GSWVPIQGRC PIRSNETGEA IGGTMRFRYA FRKKEDKDSD MLWSNWFMRE YRLFDNVKGT  540
LHQRQVLCKI TCNDKNFID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4c2l_A2e-226237223335ENDO-XYLOGALACTURONAN HYDROLASE A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893119e-54AC189311.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390881.10.0probable polygalacturonase At1g80170
TrEMBLA0A087HH580.0A0A087HH58_ARAAL; Uncharacterized protein
STRINGA0A087HH580.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64105.13e-66NAC domain containing protein 27