PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41548.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Whirly
Protein Properties Length: 235aa    MW: 25860.8 Da    PI: 10.502
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41548.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly213.42.3e-66561941139
      Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePl 99 
                 +++k+kaal++++ +ptf +++ gnl+++r+G+++++++++++erkydW kkq falsatev++l+++ s es+effhdp++k+sn+G+vrk+l+++P+
  KFK41548.1  56 AIFKGKAALSIEPCLPTFAKIEPGNLRIDRRGSVMMTFMPSIGERKYDWAKKQLFALSATEVGSLISMDSSESSEFFHDPSMKSSNAGQVRKSLSIKPH 154
                 59************************************************************************************************* PP

      Whirly 100 pdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                 +dGsG+f++l+v+nsl+k+n++++vPv+kaefav++++++
  KFK41548.1 155 ADGSGYFFSLTVNNSLLKTNDRIVVPVTKAEFAVMKTAFS 194
                 *************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.2E-7246211IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.02E-6748233IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.6E-6057191IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MMKQARSLLS RSLYDQSKGK VVASSSLRGF ATWADSSPTQ RRDTPKPSGR VFAPYAIFKG  60
KAALSIEPCL PTFAKIEPGN LRIDRRGSVM MTFMPSIGER KYDWAKKQLF ALSATEVGSL  120
ISMDSSESSE FFHDPSMKSS NAGQVRKSLS IKPHADGSGY FFSLTVNNSL LKTNDRIVVP  180
VTKAEFAVMK TAFSFALPHI MGWGRLTGQV DTAATQGITL HPKTDPMQLE LEWGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A1e-103422112171Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B1e-103422112171Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C1e-103422112171Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D1e-103422112171Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41548.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935321e-148AB493532.1 Arabidopsis thaliana At1g71260 mRNA for hypothetical protein, partial cds, clone: RAAt1g71260.
GenBankAY0721101e-148AY072110.1 Arabidopsis thaliana unknown protein (At1g71260) mRNA, complete cds.
GenBankAY1229611e-148AY122961.1 Arabidopsis thaliana unknown protein (At1g71260) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390787.11e-133single-stranded DNA-binding protein WHY2, mitochondrial isoform X2
SwissprotQ8VYF71e-125WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A087HHE61e-173A0A087HHE6_ARAAL; Uncharacterized protein
STRINGA0A087HHE61e-174(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123582731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-113WHIRLY 2